PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AS_385093B54.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 827aa MW: 94752.4 Da PI: 4.7787 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 78.6 | 1.1e-24 | 105 | 192 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y+eY++++GFsvrk k+++ + ++ i +++++Cskeg +++e+ + +++ +++etrt+Cka+++ + +++g+w+v+++ eHnHel Traes_5AS_385093B54.2 105 LYCEYGHRMGFSVRKGKQYYFTGTKVIRTKDYYCSKEGLKDDEQLT--EANFNKPETRTNCKAMVRFRVDSEGQWRVIQIIPEHNHEL 190 7*****************************************9988..9999************************************ PP FAR1 90 ap 91 +p Traes_5AS_385093B54.2 191 VP 192 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-22 | 105 | 192 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.2E-30 | 303 | 397 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.656 | 584 | 620 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.2E-5 | 586 | 613 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.7E-7 | 595 | 622 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 827 aa Download sequence Send to blast |
MFPFVVDDAE MEGTSVPIEI DGDAICLENV GDDEHEAQES EQVQIIYATE NGAQVAFDSQ 60 EQGTEEHSVR SEEEQENNSV IPSREEFTEE LRTKVAYSEE QAYRLYCEYG HRMGFSVRKG 120 KQYYFTGTKV IRTKDYYCSK EGLKDDEQLT EANFNKPETR TNCKAMVRFR VDSEGQWRVI 180 QIIPEHNHEL VPPEEIHLLR SVRILSIPKP GTLNAMVNAE IQSMHDSLHV HDDGAECHSQ 240 VSIQSYALLE PEDAEALVGY LKRRTIEQGM FYWDVQVDQE GQMTNFFWRD GRSRVDYDCF 300 GDVVVFDTSY RTNKYNMICA PFVGINHHMQ NVMFGCAFML DESLTSYEWL LKSFLESMGG 360 CPPKTIFTDQ NDTISKAIEV ILPETCHCLC QWHIEKNLQA HLDTPNASGT FHSMFMKCMK 420 DCESETEFEE TWAMMLQEHN LQDDQWLTDL FEQRHKWCTA LHKVAFDCGI RSLDRNFSSD 480 NVLGSIADES TSPTNFALEF DKLVGSWRTN ESVDDIQCKQ ISPECSVKQN SILQHAAEVY 540 THKVYKSLET EFLDGCSGTS YQEMQCSETL YRFEFIMQSS PKVWVVFLDT STMELSCSCK 600 KFEMMGILCS HALNALGLKN LDKIPESYVL KRWTKYVRKG TYVFPSDQSP EQDCTEAVLA 660 YRNRAMWFVY DLLMKSKGHQ DTRKLILDVL ENGEKSLESV CELKRMHIHP SGKDKDASKA 720 EKRKKKLKKQ DKNSRNVKQV VLPPPAESVF VDQPNQNQYF ATEDIATNSS IGRPFFYQEY 780 PATGVSASQI EGHANIHSVP QCAPAPQEFP AYDAVHPPST FGGESNF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358485 | 0.0 | AK358485.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1077H06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179689.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A446SP74 | 0.0 | A0A446SP74_TRITD; Uncharacterized protein | ||||
STRING | Traes_5AS_385093B54.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-80 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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