PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AS_282747CEF.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | CPP | ||||||||
Protein Properties | Length: 764aa MW: 82099 Da PI: 7.6937 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49.3 | 9.4e-16 | 455 | 494 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C Nk + Traes_5AS_282747CEF.2 455 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNKPS 494 689**********************************976 PP | |||||||
2 | TCR | 50.6 | 3.9e-16 | 540 | 578 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN Traes_5AS_282747CEF.2 540 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 578 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.1E-15 | 454 | 495 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.845 | 455 | 580 | IPR005172 | CRC domain |
Pfam | PF03638 | 8.2E-12 | 457 | 492 | IPR005172 | CRC domain |
SMART | SM01114 | 4.4E-17 | 540 | 581 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-11 | 542 | 578 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 764 aa Download sequence Send to blast |
IGTFRIRPPS AFVDFDSPVF NFINNLSPIP PPKPQDTSHN VHLFKSSDLA PVSSIFASPH 60 VNPPKESKLL IRDDSVQLSQ DSNSPNSVRT RLGSAIRLIK CKNIVSENCS FTCHLNQGPI 120 DSSANRSNST SKLPQTIQFV GDSSECGKNQ NADGKKDLAR DQESIELEGA LLDHTGPDKI 180 DSSQPGRIVH ENQQCEQQKD GFTAYDGDYL ITHESSMDML RLAPPCETDT QLVNETLNAD 240 NVFSGNSLLT DGPSGSYISN AAHDPNLYWD GTVEGPTTDY TPQLLPGACQ SQSVSNDQIC 300 NAVEEPSDHI PIDQSALSQN MRGMRRRCLF NEKAGAVNKA AKKTSDRHSA NTTTPRCKTN 360 SGDKPVRTPP CALPGIGLHL NALAPISTDK IVPQAAQSSI NQASNFPCAV SSSTSEPNIV 420 NEDSSQAIVV ANADESGQGS PKKKRHKFDD GDGTSCKRCS CKKSKCLKLY CECFHAGVFC 480 SEPCSCQGCL NKPSNMEIVL STREQIESRN PLAFAPKVIR TSEPGQESGE YSNKTPASAR 540 HKRGCNCKKS SCLKKYCECY QGGVGCSISC RCEGCKNAFG RREGLGPLSI EEAKQGNEEN 600 SACVKEEKKE DDNNQLVICP AANPAPAENV LTTPSAMDIR PLASLPPSSS KRPRSTTKVL 660 GHPSRLCNSQ APLKTDTVLS PFENYAEIMF GVGTSDSLKG GLSPQTSVKV VSPNKKRVSP 720 PRIGTGLSPI CKSGRKLILK SIPSFPSLGG DVNNADTKTT LPAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-15 | 459 | 577 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 2e-15 | 459 | 577 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354434 | 0.0 | AK354434.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007E24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189110.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A3B6KCM4 | 0.0 | A0A3B6KCM4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446SQ04 | 0.0 | A0A446SQ04_TRITD; Uncharacterized protein | ||||
STRING | Traes_5AS_282747CEF.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12746 | 26 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 2e-75 | TESMIN/TSO1-like CXC 2 |
Publications ? help Back to Top | |||
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