PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AS_25253EF6C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 1183aa    MW: 131359 Da    PI: 9.3318
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AS_25253EF6C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-074580340
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                            W+++E e+++ a +++G++ W+++a  +   Rt  ++
  Traes_5AS_25253EF6C.1 45 QWSKDELERFYAAYRKYGKD-WRKVAGAVH-DRTSDMV 80
                           6*****************99.******999.9997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.57E-93889IPR009057Homeodomain-like
PfamPF002495.2E-64584IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-54584IPR009057Homeodomain-like
CDDcd001673.98E-44680No hitNo description
SMARTSM011356.4E-58651752IPR033471DIRP domain
PfamPF065841.3E-33651751IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1183 aa     Download sequence    Send to blast
MSSTRKVRNV NKRYAKINED WPEKDATVVH KNKVRKKKLS DLGSQWSKDE LERFYAAYRK  60
YGKDWRKVAG AVHDRTSDMV EALYNMNRAY LSLPEGTATA AGLIAMMTDH YNILDGSNSD  120
HESNGSPKTS RKPQKRGRAK LQSVSKASDT RYPDLLQSQP ASSSYGCLSL LKKKRSGDLF  180
VGNKPRAVGK RTPRVPVASM YRDDKIGPSN RQAKPDANNG DEEGALAALA LAEVCQRGSP  240
QVSQTSGRSS GQMFLSPGKS IDRKNADSEM GSSKMHGFQV DADYPEGSLG SREAETGDYP  300
KDASYFLNNE GSASGKSKPK VKRSQKRRKK AAHKTDDQFE DDREACSGTE EGCSSRKAKD  360
ISDLDVFGSK GSWPSNKSNK RSRQLFFGDE LSALDALHTL ADISVNILQP SSIAESESSA  420
QFKDGSKDNE SDDKPSVPAA VSLFDKKDKP RKTKKIKRQS EIASNEVVTR KKARLSKDHH  480
HDGSTSDVKQ DDCKCGVKME KKKRKSSTLK ISKDEKNTLK DSEKTEASAE EGKVSSNKGR  540
HTHVSPVSKQ NKSKAQESSP AHADFGKEAM DTVDMTENAI TQQSDSASKS KSRRKLGILK  600
ALAPESKPAE GADDSCDNVS YPVNNVTELK DKLSHCLSSR FLRRWCMSEW FYSAIDYPWF  660
AKSEFVEYLN HVKLGHVPRL TRVEWGVIRS SLGKPRRLSK QFLQEEREKL SQYRESVRQH  720
YAELQSGVRE GLPTDLARPL AVGQRVIACH PKTRELHDGG VLTVDRSRCR VQFDRPELGV  780
EFVMDIDCMP LHPLENFPES LRRQNIVNKY YSSFSEVKFE DRSKEYGGGG APRFIPNGDA  840
FDSIAQAKTT ANEATVAAQQ AMYGQPCTLS QIQEREADIR ALAELSRALD KKEALLVELR  900
HMNEEVSGKQ KDGEIIRDLE HFRKQYAMVL VQLRDSNDHV ASALLCLRQR NTFHGQPTQS  960
YPNKSMENGG ASNRTPDPSS NLFGYINQES GSQVMEIIET SRSKAKTMVD VAVQAMCKVS  1020
EGENAFAKIG EALDNLNLRG TGSGSSILGI RRIPPDSGQA NSDNSASGRF DPAAATNNIS  1080
SPRVLPNGSD SEAQFPSELI SSCVATILMI QNCTEKQYHP AEVAHILDSA LSRLQPCSSQ  1140
NVPIFREIEM CMGIIKNXXX XXXXXXXXXX XXXXXSFVIY IYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317329KPKVKRSQKRRKK
2320326VKRSQKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3658640.0AK365864.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2038G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183561.10.0protein ALWAYS EARLY 2-like isoform X1
TrEMBLA0A3B6KC270.0A0A3B6KC27_WHEAT; Uncharacterized protein
TrEMBLA0A446SM080.0A0A446SM08_TRITD; Uncharacterized protein
STRINGTraes_5AS_25253EF6C.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62302331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]