PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AS_1986BD81F.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 713aa MW: 81381.4 Da PI: 5.9827 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 76.3 | 5.9e-24 | 85 | 174 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskr.ngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fYneYA+++GF r+ +s++sk ++ +++r+fvCs+eg ++++ + + +++r+r++ r gC+a+++v +e +++w+v+kl++ Hn Traes_5AS_1986BD81F.2 85 FYNEYARHLGFPFRVGRSRRSKGaEEVVVMRRFVCSREGMYRKKNPSsdEATKKRERMSMREGCNAMMEVVRE-SNHWVVSKLDTAHN 171 *********************651566789*********8777665545788999****************99.9************* PP FAR1 87 Hel 89 H+l Traes_5AS_1986BD81F.2 172 HNL 174 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-21 | 85 | 174 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.4E-29 | 267 | 358 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 11.14 | 546 | 582 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.7E-9 | 548 | 579 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0011 | 557 | 584 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence Send to blast |
MEAARSEGDE LIADYVDCLM SLDTNAQSVQ NNNLILGDPV IEAGVAASVG GITEQNAMKD 60 FVPPEDPKEP LLGMTFESDE AAKTFYNEYA RHLGFPFRVG RSRRSKGAEE VVVMRRFVCS 120 REGMYRKKNP SSDEATKKRE RMSMREGCNA MMEVVRESNH WVVSKLDTAH NHNLGTCSRV 180 GYLRDRGLLD ASNKITMMGS DGVPFLRQNI LGEGGDAQGL LDYLKKMQGN DPAFFHAIQV 240 DKNSCLMNVF WADARAKLAY QHFGDAVTFD TTYKKNKYMM PFVTFSGVNH HLQRVIFGCA 300 LLMEDTECSF VWLFETWLAA MSGKAPCSLV TDQNRAMKAA IGRVFPHTCH RFCKWHILSR 360 TKQKLAHTYS EHPTLIDELE SCVIESETIN TFETAWMSII DTYDLRNNTW LQAMYNIRQK 420 WVPLYLMDTF CAEISKAQKL ETMNDFYKKY FSTKVTLEVF LTQFDLSTEN HYEEEAKADM 480 DTSLNLVTTK TASPMEKQAA RTYTKAVFSR FQEEFTESLA YIIQKTKDGC ISEYNVMKDE 540 NSSDTFCVTY NASNKMAKCS CKYFEFSGIL CRHILGVFII VDPHLLPPDY YLKRWTRKAR 600 DCGLLEYNCD NHQDDACQSI TSRYDVLCAD AIRYAEKGSG SETVYKAAKD ILQKAYEEII 660 VYERNPTRVS QRDAININED VMVDDSMTDQ SLPDSRQKVT NLLGQFLVSS WSP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193510.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020193511.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020193512.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | T1MII9 | 0.0 | T1MII9_TRIUA; Uncharacterized protein | ||||
STRING | Traes_5AS_1986BD81F.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-151 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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