PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AS_12F8B3DEF.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | G2-like | ||||||||
Protein Properties | Length: 111aa MW: 11942.7 Da PI: 5.0994 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 35.4 | 2.3e-11 | 1 | 22 | 35 | 56 |
G2-like 35 lmkvkgLtlehvkSHLQkYRla 56 +mkv+gLt+++vkSHLQkYRl+ Traes_5AS_12F8B3DEF.3 1 MMKVDGLTNDEVKSHLQKYRLH 22 7*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-10 | 1 | 25 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-8 | 2 | 22 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MMKVDGLTND EVKSHLQKYR LHTRRASDGE QQQSASAGQW PRPEQYTTSQ HSSSQSGSPQ 60 GPLQLTVSSR GMSVTAGDSC DGGEENEEED GKSASYSWGM QQNGTKASSS S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951951 | 1e-160 | JF951951.1 Triticum aestivum clone TaMYB68 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151221.1 | 2e-49 | myb family transcription factor EFM-like | ||||
Swissprot | F4JRB0 | 9e-11 | HHO5_ARATH; Transcription factor HHO5 | ||||
TrEMBL | A0A3B6KC44 | 3e-72 | A0A3B6KC44_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6KDA4 | 2e-72 | A0A3B6KDA4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446SR03 | 7e-73 | A0A446SR03_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446SRA6 | 3e-72 | A0A446SRA6_TRITD; Uncharacterized protein | ||||
STRING | Traes_5AS_12F8B3DEF.3 | 3e-75 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5582 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 5e-13 | G2-like family protein |
Publications ? help Back to Top | |||
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