PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AS_068F5C18A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 582aa MW: 68627.6 Da PI: 8.3663 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 44.6 | 4.6e-14 | 4 | 63 | 30 | 91 |
FAR1 30 krtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 k ++ C+++gk++ + + +++r++++ ++t+C+ak+ vk++ +g+we t++++eHnH+l+p Traes_5AS_068F5C18A.1 4 KFHLICNRSGKSRATPDL-QRKRKRKSIEKTNCQAKVIVKLT-KGQWEFTTVRNEHNHPLCP 63 56789********99988.99999******************.9****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-12 | 4 | 63 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.1E-27 | 185 | 276 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.124 | 467 | 503 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MRKKFHLICN RSGKSRATPD LQRKRKRKSI EKTNCQAKVI VKLTKGQWEF TTVRNEHNHP 60 LCPSASLTKF YLSHKHISTE ERSFLKVLQR TRIPPNKVMK IFRRMRGSFG SIPFKKKDGT 120 NLLCIEQHRK ENSDVGRMLM YFKEKELQDP SFQCMKQTDE DNIVRSVFWT DARSRMDYEI 180 FGDFLLFDTT YTTDRHHMLF APIIGINNHG RTLLLGCALL HDESAETYKW MFETLLHVME 240 DKMPVSIITN QDEAMAKAIG EVMPQVRHRL CKWDVLEKAQ QNISAFIAES GNIKADLNSL 300 IDNSLTEKEF EEGWDALIER YGASENEYLQ LLWQRRKNWV PVYFREDFYP FVQSHGCDEG 360 MNLLFNDYVL SIDRIEKFIE RYEEIHKNIT KTDEEDRLQT GTVPLCFSLQ PIEKHAADIY 420 TRQIFLKVQR ELLHSTAFNV QEVQRGAVYR LNKVFSYENP EFDQNNFEVQ VESGTNAFKC 480 QCAKFTRDGI LCCHIFRLFT QFGINQIPEQ YIVPRWTEKF REEKEKQYKK KCSEQMDTTM 540 RYTNFMTKMA DLGKTICSDG AKYDAFMLEV DKIQVNFATA QK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 27 | RKRKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360162 | 0.0 | AK360162.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111O12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161795.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | T1NNY9 | 0.0 | T1NNY9_TRIUA; Uncharacterized protein | ||||
STRING | Traes_5AS_068F5C18A.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 7e-78 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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