PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_F8DEBE8E7.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 425aa MW: 46535.2 Da PI: 5.3558 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.6 | 4.8e-16 | 84 | 144 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse...ng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k+ ++++lg ++t+e Aa+a++ a++k++g Traes_5AL_F8DEBE8E7.1 84 SIYRGVTRHRWTGRFEAHLWDkNCFtsiQNkKKgRQVYLGAYDTEEAAARAYDLAALKYWG 144 57*******************5444666335446*************************98 PP | |||||||
2 | AP2 | 55.8 | 1.2e-17 | 187 | 239 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + +k+ +lg+f+t eeAa+a++ a+ +++g+ Traes_5AL_F8DEBE8E7.1 187 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFDTQEEAARAYDLAAIEYRGA 239 89****99**********988422...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.14E-11 | 84 | 154 | No hit | No description |
SuperFamily | SSF54171 | 3.6E-17 | 84 | 153 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.8E-14 | 84 | 144 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-28 | 85 | 158 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-16 | 85 | 152 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.323 | 85 | 152 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-18 | 187 | 248 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.64E-27 | 187 | 248 | No hit | No description |
Pfam | PF00847 | 3.3E-13 | 187 | 238 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-28 | 188 | 252 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.216 | 188 | 246 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-19 | 188 | 246 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
SPPPPPPQPS PSSSPACSLS PSPSSPSSSD SSSIAIPRKR ARTQKAGSAK AKAAPKRAKK 60 DASRSSKESD ASANGAAAAG KRSSIYRGVT RHRWTGRFEA HLWDKNCFTS IQNKKKGRQV 120 YLGAYDTEEA AARAYDLAAL KYWGPETTLN FTVDEYAKER SEMEGVSREE YLAALRRRSS 180 GFSRGVSKYR GVARHHHNGR WEARIGRVLG NKYLYLGTFD TQEEAARAYD LAAIEYRGAN 240 AVTNFDISRY LDQPQLLTQL EQGPQVVPAL QEELQHDHQS DNAVQELNSG EAQKPGSVNE 300 PIAVDDTDNT GDMGAPLVFD SGVEENLWSP CYELENFFGP NNSNSMNLSE YFNVNDATFE 360 SNIGYLFEGC PDIDDCSTRH GTGLAALGFL KEGDDNMKDV PDMDAELTPQ ANDVSCPPKM 420 ITVCN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 36 | 42 | PRKRART |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355408 | 0.0 | AK355408.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1020F01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148209.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g79700 | ||||
TrEMBL | A0A3B6KDF8 | 0.0 | A0A3B6KDF8_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5AL_F8DEBE8E7.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5526 | 35 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 4e-75 | AP2 family protein |
Publications ? help Back to Top | |||
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