PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_EDF2DD187.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 26332.7 Da PI: 4.4303 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.9 | 5.7e-11 | 66 | 108 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR+r+N+++ +r ++P+ +K++Ka+i + A+ YI +Lq Traes_5AL_EDF2DD187.1 66 NERDRRRRLNEKLYAIRGVVPNI-----TKMNKASIIQDAIAYIEELQ 108 7*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.68E-12 | 57 | 112 | No hit | No description |
PROSITE profile | PS50888 | 13.605 | 58 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-14 | 63 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-12 | 64 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-8 | 65 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-12 | 65 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MESDMEISLD FSWETPSFFE LCDADSMHLP AEDSLSCLYE HGDSTSSPDG ANSGLTRRWA 60 GRNMLNERDR RRRLNEKLYA IRGVVPNITK MNKASIIQDA IAYIEELQEQ ERQILAAPGT 120 DGCAAVVQAD STVDDGVGSP PRTTSASSIC SPSPHPVQIL ELEVMQVAED LAVVNVRHRK 180 AQEAMAKVYG VLESLCLNVI TASVTVVSDN IVHNMFIETD GMDCAQTIKE MVKSHSVISM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357294 | 0.0 | AK357294.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1049P14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177107.1 | 1e-163 | transcription factor bHLH35-like | ||||
TrEMBL | A0A446TQB8 | 1e-176 | A0A446TQB8_TRITD; Uncharacterized protein | ||||
STRING | Traes_5AL_EDF2DD187.1 | 1e-179 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1044 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 8e-22 | bHLH family protein |
Publications ? help Back to Top | |||
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