PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_D98C7CE92.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | G2-like | ||||||||
Protein Properties | Length: 140aa MW: 15441.2 Da PI: 8.7737 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.1 | 1.8e-32 | 17 | 72 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH++Fv a++qLGG+++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+ Traes_5AL_D98C7CE92.1 17 KTRRCWSPELHRHFVAALHQLGGPQVATPKQIREVMKVDGLTNDEVKSHLQKYRLH 72 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-29 | 14 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.772 | 14 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.52E-17 | 15 | 75 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-26 | 17 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.2E-7 | 19 | 70 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MPPPGPGLQT HEQQSRKTRR CWSPELHRHF VAALHQLGGP QVATPKQIRE VMKVDGLTND 60 EVKSHLQKYR LHNQRCPSSS SASHPVMLVG DLWAHQEQSS SQSRSPEGPL QLSVSGVAVS 120 ALTGSDSSEE DDRSVGYSRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-15 | 17 | 75 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-15 | 17 | 75 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-15 | 17 | 70 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-15 | 17 | 70 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-15 | 17 | 70 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-15 | 17 | 70 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-15 | 17 | 75 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-15 | 17 | 75 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-15 | 17 | 75 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-15 | 17 | 75 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-15 | 17 | 75 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-15 | 17 | 75 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. | |||||
UniProt | Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951944 | 0.0 | JF951944.1 Triticum aestivum clone TaMYB61 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199780.1 | 4e-79 | uncharacterized protein LOC109785601 | ||||
Swissprot | Q9FX84 | 9e-33 | HHO6_ARATH; Transcription factor HHO6 | ||||
Swissprot | Q9ZQ85 | 3e-32 | EFM_ARATH; Myb family transcription factor EFM | ||||
TrEMBL | A0A3B6KQ18 | 3e-96 | A0A3B6KQ18_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446TFX6 | 3e-96 | A0A446TFX6_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446TG97 | 3e-96 | A0A446TG97_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446TGA4 | 3e-96 | A0A446TGA4_TRITD; Uncharacterized protein | ||||
TrEMBL | G9DRA7 | 3e-96 | G9DRA7_WHEAT; MYB-related protein | ||||
STRING | Traes_5AL_D98C7CE92.1 | 2e-98 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1817 | 37 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 2e-33 | G2-like family protein |
Publications ? help Back to Top | |||
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