PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_D6D568F0E.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 190aa    MW: 21233.7 Da    PI: 7.8021
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_D6D568F0E.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.6e-1069116455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++Y++ L+
  Traes_5AL_D6D568F0E.2  69 SHSLAERARREKITERMKILQDLVPGC----NKVIGKASVLDEIINYVQALE 116
                            8*************************9....677**************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-1763132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.57E-963120No hitNo description
Gene3DG3DSA:4.10.280.107.4E-1865136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.66365115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-769116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-971121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
SPIHWNLNVQ TDAEAKRFKA NKSSDENGSF RKDAEADSRN ASKAVDQNPP PPKQDFIHVR  60
ARRGQATDSH SLAERARREK ITERMKILQD LVPGCNKVIG KASVLDEIIN YVQALERQIE  120
FLSMKLEAVN AHAHAHNGVE TFPTKDFAAP TYNTAPGLTF DPQTPREYAQ GSPAAEWLHM  180
QIGGTYERVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3692631e-126AK369263.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2087O19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152106.11e-132transcription factor bHLH79-like
SwissprotQ84T081e-104BH089_ORYSJ; Transcription factor BHLH089
TrEMBLT1MAZ81e-133T1MAZ8_TRIUA; Uncharacterized protein
STRINGTraes_5AL_D6D568F0E.21e-141(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-63BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]