PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5AL_D369204D3.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HSF

Protein Properties

Length: 86aa MW: 10027.4 Da PI: 11.4897

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5AL_D369204D3.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	83.3	3.6e-26	1	74	21	103
ESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 21 wsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103 w e+g+sfvv+++ e+a+++Lp +Fkh nf+SFvRQLn+YgF+kv ++ weF++++F++g++ ll+ i+r+k + Traes_5AL_D369204D3.1 1 WGEQGRSFVVWKPVELARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANENFRRGEQGLLSGIRRRKAT 74 999******************************************99.........********************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00447	1.3E-22	1	71	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	7.8E-27	1	71	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.18E-24	1	71	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.1E-28	1	71	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.0E-9	20	32	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	21	45	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.0E-9	33	45	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
WGEQGRSFVV WKPVELARDL LPLHFKHCNF SSFVRQLNTY GFRKVVPDRW EFANENFRRG 60 EQGLLSGIRR RKATATTTTP QSSKTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d8k_B	2e-15	1	75	24	109	Heat shock factor protein 2
5d8l_B	2e-15	1	75	24	109	Heat shock factor protein 2
5d8l_D	2e-15	1	75	24	109	Heat shock factor protein 2
5d8l_F	2e-15	1	75	24	109	Heat shock factor protein 2
5d8l_H	2e-15	1	75	24	109	Heat shock factor protein 2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK366231	1e-124	AK366231.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2041F03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003578229.1	2e-52	heat stress transcription factor B-1
Swissprot	Q67TP9	3e-49	HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBL	A0A3B6KJH1	3e-56	A0A3B6KJH1_WHEAT; Uncharacterized protein
TrEMBL	A0A446T4N4	3e-56	A0A446T4N4_TRITD; Uncharacterized protein
TrEMBL	M7YQN6	7e-56	M7YQN6_TRIUA; Heat stress transcription factor B-1
STRING	Traes_5AL_D369204D3.1	5e-58	(Triticum aestivum)
STRING	TRIUR3_26103-P1	1e-56	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	5e-35	heat shock transcription factor B4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Grand X, et al. Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns. Plant Biotechnol. J., 2012. 10(7): p. 840-50 [PMID:22607456] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]