PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5AL_CA424FE08.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 291aa MW: 32478.2 Da PI: 9.4075

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5AL_CA424FE08.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.2	2.7e-23	140	231	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++YA++vGF vr ++k ++ +++f C keg+r e+ ++k+rr+ + tr+gC+a + v++e+dgk+++++l++ H Traes_5AL_CA424FE08.2 140 EFYKTYAHHVGFGVRLGQQKIV--DNVLLWKRFLCAKEGFRPEKGMVvvdHSKKRRKVKLTRCGCQAFIYVTRESDGKYKIASLSEYH 225 6**************99988..8889***********99888888999999*************************** PP FAR1 86 nHelap 91 nH+++p Traes_5AL_CA424FE08.2 226 NHPFVP 231 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-20	140	231	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
EHSNANPNPQ RVAASSSLPT VXXXRCLAGR LRPVEFQIHP RPSSRRHSGC PGGPPLSEAE 60 TLCGQVLQVV ESANSVQNQD LSDATSFAEI NSPMLLIDDA STPKKKQAFS QEGSLYKPQC 120 DEELKPKVGM LFDDIGSVME FYKTYAHHVG FGVRLGQQKI VDNVLLWKRF LCAKEGFRPE 180 KGMVVVDHSK KRRKVKLTRC GCQAFIYVTR ESDGKYKIAS LSEYHNHPFV PPSHQHLIRS 240 NRQISERVKT TLHDCQKASI GTALAYRFLH VGAGGFQHVG CTQKDLQNHY G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	193	KKRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020177361.1	1e-104	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020177362.1	1e-104	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020177364.1	1e-104	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020177365.1	1e-104	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020177366.1	1e-104	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020177367.1	1e-105	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A453ITT3	1e-105	A0A453ITT3_AEGTS; Uncharacterized protein
STRING	Traes_5AL_CA424FE08.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-23	FAR1-related sequence 5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]