PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_BF8D0B7C0.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 407aa    MW: 46652.2 Da    PI: 10.1537
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_BF8D0B7C0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS372.46.1e-114344031374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l++ L++cA+av+++d + a++lL+++++++  +gd  qRla++f+++L+arla+++s+ y+ l +++t+    s+ l+a++l++ ++
  Traes_5AL_BF8D0B7C0.1  34 LRTILIHCAQAVAADDRRTANELLKQIKQHSKVNGDGSQRLAFCFAQGLEARLAGTGSQQYHRLVAKRTT---ASDMLKAYHLYFAAC 118
                            5789************************************************************999999...9************** PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                            P+ ++sh++ Nq+Il  ++++++vHiiDf+i  GlQWp+L++ L++R++gpp lRiTg++ pe+g   +e++eetg+r   +A++++v
  Traes_5AL_BF8D0B7C0.1 119 PFKRLSHFLSNQTILSMTKNAKKVHIIDFGIYFGLQWPCLIRRLSKREGGPPILRITGIDVPEPGfrPTERIEETGQR--XYAKKFEV 204
                            ****************************************************************9*9**********9..79****** PP

                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            pfe++  +a+++e+++ e+L+v ++E+++Vn+ ++  +l de+v+++s+r++vL+++++++P ++++   + +++ + F +rf eal 
  Traes_5AL_BF8D0B7C0.1 205 PFEYHG-IASKWETIRAEDLKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALF 291
                            ******.7******************************************************************************** PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                            ++salfd+lea++pr++++r+ +Er l+gre+ nv+aceg++r+er et+++W+ r  +aGF + pl+++++ +ak  ++ ++ + + 
  Traes_5AL_BF8D0B7C0.1 292 HFSALFDMLEATVPRDDDQRRLIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQDIVIKAKDKVKDIYHKDFV 379
                            ***********************************************************************************888** PP

                   GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                            ++e+sg+l++gWk+r +++++ W+
  Traes_5AL_BF8D0B7C0.1 380 IDEDSGWLLQGWKGRIIYAITTWK 403
                            ***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.3888383IPR005202Transcription factor GRAS
PfamPF035142.1E-11134403IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
RSEASKNSQV IQTKGTTGVK TRGRKPTKND VVDLRTILIH CAQAVAADDR RTANELLKQI  60
KQHSKVNGDG SQRLAFCFAQ GLEARLAGTG SQQYHRLVAK RTTASDMLKA YHLYFAACPF  120
KRLSHFLSNQ TILSMTKNAK KVHIIDFGIY FGLQWPCLIR RLSKREGGPP ILRITGIDVP  180
EPGFRPTERI EETGQRXYAK KFEVPFEYHG IASKWETIRA EDLKVGKDEV VIVNCLYRFR  240
NLIDETVAVD SPRNRVLNTI RQVNPAIFIH GIVNGSYSVP FFITRFREAL FHFSALFDML  300
EATVPRDDDQ RRLIERDLFG REALNVIACE GSDRVERPET YKQWQVRNLR AGFVQSPLNQ  360
DIVIKAKDKV KDIYHKDFVI DEDSGWLLQG WKGRIIYAIT TWKHNNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-49384038375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3627960.0AK362796.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184239.10.0scarecrow-like protein 9
RefseqXP_020184240.10.0scarecrow-like protein 9
RefseqXP_020184241.10.0scarecrow-like protein 9
SwissprotO809331e-171SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A3B6KEE40.0A0A3B6KEE4_WHEAT; Uncharacterized protein
STRINGTraes_5AL_BF8D0B7C0.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-170GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]