PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_A3653B781.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 119aa MW: 13325.2 Da PI: 10.5507 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.4 | 5.4e-32 | 51 | 109 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYeg+Hnh+ Traes_5AL_A3653B781.1 51 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGDHNHN 109 69*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 5.5E-17 | 4 | 48 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-34 | 38 | 110 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.769 | 45 | 111 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.2E-27 | 48 | 110 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-37 | 50 | 110 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-27 | 52 | 108 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MQQRRRCAGK EDGSGRCATG SRCHCAKKRK LRIRRSIKVP AISNKVADIP ADEFSWRKYG 60 QKPIKGSPHP RGYYKCSSVR GCPARKHVER CVDDPAMLIV TYEGDHNHNH NQAAAAQPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 43 | 109 | 7 | 72 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ840408 | 1e-167 | DQ840408.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 9 (WRKY9) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179772.1 | 5e-76 | protein WRKY1-like | ||||
Swissprot | Q32SG4 | 5e-75 | WRKY1_MAIZE; Protein WRKY1 | ||||
TrEMBL | A0A3B6KP70 | 2e-82 | A0A3B6KP70_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446TEA0 | 2e-82 | A0A446TEA0_TRITD; Uncharacterized protein | ||||
STRING | Traes_5AL_A3653B781.1 | 2e-83 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP617 | 38 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 6e-48 | WRKY DNA-binding protein 21 |
Publications ? help Back to Top | |||
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