PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_9ACF2EAB6.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 357aa MW: 40963.2 Da PI: 8.2978 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.4 | 7.1e-15 | 290 | 346 | 32 | 86 |
--SEEEEEE.TTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 32 esktltled.esgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 + ++tl++ e+++sWev+ ++s++ lt+GWk F+k+n+Lk+gD+++Fk+++ Traes_5AL_9ACF2EAB6.2 290 C--KITLKSvERNKSWEVEGVNyhPGTSRSyNCLTRGWKAFCKENELKAGDICTFKVVN 346 3..7999998999******94446444444689***********************654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.247 | 1 | 76 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-5 | 35 | 76 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.47E-6 | 36 | 76 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-5 | 100 | 195 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.84E-6 | 101 | 194 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.034 | 145 | 197 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0042 | 265 | 357 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.43E-12 | 278 | 343 | No hit | No description |
SuperFamily | SSF101936 | 2.94E-13 | 279 | 354 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-14 | 281 | 354 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.5E-12 | 289 | 354 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.321 | 291 | 357 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
ACWVLWYRRS WRRADGPRSQ SVRQECLACX XXXXXGAFLG DGWPQFVAAH GIGVGWYLVI 60 RHEGCGVLTL KAFDASFVIK EFGLTITVLS PAEIENAFAR KPQFIVPLQR SFMEKMPIPP 120 EFLQRGYISE EDLNRPRPIA TFLTSWHIEL KKDGPNVFFT GSEWPKFLAY FEIAETDVLL 180 IKYQGCMNFS FETFQNGNNE HIEEKTSSSQ QSEQSPGAQS QEEEHVCSRK RKQSEVKSML 240 DGSTTSQHRK KALCELGSTG SQAWLRKEIN ELALKRYLHF PARFGFLERC KITLKSVERN 300 KSWEVEGVNY HPGTSRSYNC LTRGWKAFCK ENELKAGDIC TFKVVNSTLW HVVIDHC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 227 | 232 | SRKRKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181882.1 | 0.0 | putative B3 domain-containing protein Os04g0346900 isoform X5 | ||||
TrEMBL | M8C2K6 | 0.0 | M8C2K6_AEGTA; Putative B3 domain-containing protein | ||||
STRING | Traes_5AL_9ACF2EAB6.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31630.1 | 5e-07 | B3 family protein |
Publications ? help Back to Top | |||
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