PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_886E8DACD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 264aa    MW: 29714.9 Da    PI: 7.0181
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_886E8DACD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.51.1e-961263111373
                   GRAS 111 rvHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                            ++HiiDf isqG+QW++L+qaLa+Rp+gpp++RiT ++++es   +   le +g+ L+++A+e+g+pfef++l   +++ +e  +L v
  Traes_5AL_886E8DACD.1   1 MIHIIDFRISQGVQWISLIQALAARPGGPPTVRITCIDDSESAyvRGGGLEILGNTLSDIAREFGLPFEFHAL-DISVSGVEEGHLGV 87 
                            79*************************************99889999*************************6.668999******** PP

                   GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                             pgEa+aVn+ l lh+++desvs +++rd++L+lvk+lsPkvv++veqe+++n+++F +rf+e+l+yy+a+f+s++++ pre +er+k
  Traes_5AL_886E8DACD.1  88 IPGEAVAVNFNLTLHQIPDESVSAANHRDRILRLVKQLSPKVVTIVEQELNTNTGPFTQRFAETLDYYTAIFESIDVERPREPKERTK 175
                            **************************************************************************************** PP

                   GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                            +E+++l+r+ivn+vacegaer+erhe ++kW++rl++aGF+p+pl++++ ++ ++ll+ ++s+ yr+ e++g ++lgWk+r+Lv+ Sa
  Traes_5AL_886E8DACD.1 176 MEQHCLARKIVNIVACEGAERVERHEVFSKWNARLTMAGFRPLPLGSRVKDNLRTLLHYYSSN-YRLAERDGVIYLGWKNRALVVSSA 262
                            **********************************************************99977.************************ PP

                   GRAS 373 W 373
                            W
  Traes_5AL_886E8DACD.1 263 W 263
                            * PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.5321245IPR005202Transcription factor GRAS
PfamPF035144.0E-941263IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MIHIIDFRIS QGVQWISLIQ ALAARPGGPP TVRITCIDDS ESAYVRGGGL EILGNTLSDI  60
AREFGLPFEF HALDISVSGV EEGHLGVIPG EAVAVNFNLT LHQIPDESVS AANHRDRILR  120
LVKQLSPKVV TIVEQELNTN TGPFTQRFAE TLDYYTAIFE SIDVERPREP KERTKMEQHC  180
LARKIVNIVA CEGAERVERH EVFSKWNARL TMAGFRPLPL GSRVKDNLRT LLHYYSSNYR  240
LAERDGVIYL GWKNRALVVS SAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-482264111375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562815.11e-141chitin-inducible gibberellin-responsive protein 2
SwissprotQ8GVE11e-140CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A3B6KMK50.0A0A3B6KMK5_WHEAT; Uncharacterized protein
STRINGTraes_5AL_886E8DACD.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-120GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]