PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_83E515188.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 506aa MW: 55834.3 Da PI: 6.084 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 418.8 | 4.8e-128 | 136 | 505 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 l++++++c +av+++d+ +++ l+++l +l+s +gdpmqRl ay++e+L arl+ s+s+lyk+l+++e + se +++++l+ e++ Traes_5AL_83E515188.2 136 LKQVIIACGKAVAANDMYATELLISELGQLVSVSGDPMQRLGAYMLEGLVARLSFSGSKLYKSLKCKEPT---GSELMSYMHLLCEIC 220 57899****************************************************************9...9************** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174 P++kf+++ aN aI ea++ge+ +HiiDf+i qG QW++++qaLa+Rp+gpp lRiTg+++++s + l +g +L+++ +++g+ Traes_5AL_83E515188.2 221 PFYKFGYMSANGAIAEAIKGENFIHIIDFQIAQGSQWITIIQALAARPGGPPFLRITGIDDSNSAyaRGGGLDMVGTKLHSVSASCGL 308 *************************************************************988899999****************** PP GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 pfefn+ v + +++ +++L+++pgEa++Vn+++qlh+++desvs+e++rd++ +++kslsP+vv++veqe+++n++ Fl r le+l+ Traes_5AL_83E515188.2 309 PFEFNA-VRAASHEVYIQHLDIRPGEAIVVNFAYQLHHTPDESVSVENHRDRIARMIKSLSPRVVTLVEQESNTNTSAFLPRYLETLD 395 ******.688999*************************************************************************** PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350 yy+a+f+s+++ lpr+++ ri+ E+++++r+ivn++acegaer+erhe ++kW++r+ +aGF+p+pls+ +++++k+ll ++s yr Traes_5AL_83E515188.2 396 YYMAMFESIDVALPRDDKRRISTEQHCVARDIVNLIACEGAERVERHEVFGKWKARFAMAGFRPYPLSSVVNNTIKTLLDSYHSC-YR 482 ***********************************************************************************55.** PP GRAS 351 veeesgslvlgWkdrpLvsvSaW 373 +ee++g l+lgWk+r Lv+ SaW Traes_5AL_83E515188.2 483 LEERDGVLYLGWKSRVLVVSSAW 505 *********************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.19 | 110 | 487 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-125 | 136 | 505 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
FILSLSHKVA ITSDGSQKIS SNPQVFEAQY CTLESSSANG VYPTQSSTSS HSISPISGSP 60 LSQNDSHSYH TYDSPPTASC VTEIPDFQSK LKELENAILG PELDIASDSP ESLLQANHPL 120 KQDNWRQLLG IDTGDLKQVI IACGKAVAAN DMYATELLIS ELGQLVSVSG DPMQRLGAYM 180 LEGLVARLSF SGSKLYKSLK CKEPTGSELM SYMHLLCEIC PFYKFGYMSA NGAIAEAIKG 240 ENFIHIIDFQ IAQGSQWITI IQALAARPGG PPFLRITGID DSNSAYARGG GLDMVGTKLH 300 SVSASCGLPF EFNAVRAASH EVYIQHLDIR PGEAIVVNFA YQLHHTPDES VSVENHRDRI 360 ARMIKSLSPR VVTLVEQESN TNTSAFLPRY LETLDYYMAM FESIDVALPR DDKRRISTEQ 420 HCVARDIVNL IACEGAERVE RHEVFGKWKA RFAMAGFRPY PLSSVVNNTI KTLLDSYHSC 480 YRLEERDGVL YLGWKSRVLV VSSAWC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-58 | 138 | 505 | 6 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252567 | 0.0 | AK252567.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156f06, mRNA sequence. | |||
GenBank | AK360913 | 0.0 | AK360913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128D13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180371.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_020180372.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_020180373.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q8GVE1 | 0.0 | CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2 | ||||
TrEMBL | A0A3B6KQU4 | 0.0 | A0A3B6KQU4_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5AL_83E515188.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1513 | 37 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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