PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_80CF1975F.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 410aa MW: 48248.5 Da PI: 9.1903 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.8 | 5e-25 | 70 | 164 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 +fYn+YA e GFsvrk + + + n++i+ r++vC++eg +ee++ k ++++r++r+ tr+gCkak+++ + +g+w v+++ e Traes_5AL_80CF1975F.1 70 EFYNKYALEKGFSVRKGYVEWDEANEKIILRKLVCTREGCHEEKHMKrkrEDRKRKPRNITRVGCKAKFVIARVAkTGHWFVKDFIDE 157 6***************************************9999888777889999***************99988************ PP FAR1 85 HnHelap 91 HnH+lap Traes_5AL_80CF1975F.1 158 HNHPLAP 164 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-23 | 70 | 164 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.9E-31 | 285 | 374 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MTSIPPSSLR RRLPLTIPHA CRRQWNKFRH SKISVRQNIQ EDMADISAEC MAKYDDIVSR 60 MFDSEEEGFE FYNKYALEKG FSVRKGYVEW DEANEKIILR KLVCTREGCH EEKHMKRKRE 120 DRKRKPRNIT RVGCKAKFVI ARVAKTGHWF VKDFIDEHNH PLAPRDLACF LRSHRRISDE 180 QKADIIEMQS VGIRKHKIMD VLCMQSGGYD HVGCMLRDIY NFCHRYKQEI VAAGDAQTVI 240 RHMMARQERD PDYFFKYLVD KDGHLKGLFW SDTQSRLDYE AFGDVVVFDS TYRTNKYNLS 300 FVPFVGLNHH RNTVIFGCGI ISHETNEAYE WMLRTFSEAM SQKHPISVIT DGDLAMQRAI 360 RVVWPDSYHR LCVCTFSRTS YAICMMMRLG KNSDLSYMTR LLLKSMRENG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 124 | KREDRKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150064.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453K0N5 | 0.0 | A0A453K0N5_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453MVW8 | 0.0 | A0A453MVW8_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453PYR9 | 0.0 | A0A453PYR9_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5AL_80CF1975F.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-62 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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