PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_78AD0AF8E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 822aa MW: 91737.8 Da PI: 10.2354 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.4 | 6.9e-08 | 250 | 294 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ E+++l+ v++ G+++W Ia +g+ Rt+ qc r+q Traes_5AL_78AD0AF8E.1 250 NAWTACEEKRLILTVQEKGMHNWINIAVALGTQRTPFQCLARYQR 294 68*****************************99**********96 PP | |||||||
2 | Myb_DNA-binding | 45.2 | 2.1e-14 | 303 | 347 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd++lv av+ +G + W ++++ + gR ++qc +rw+k l Traes_5AL_78AD0AF8E.1 303 RAWTKEEDLQLVAAVQTFGCN-WQLVSASLV-GRIGNQCSNRWRKTL 347 68*****************88.*********.************975 PP | |||||||
3 | Myb_DNA-binding | 43.2 | 9e-14 | 355 | 400 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW+++Ed++l+ vk + +g+W++Ia+ ++ gRt qc +rw+++l Traes_5AL_78AD0AF8E.1 355 GRWSEDEDKRLLVSVKFFRSGSWNKIAQFVP-GRTQSQCSERWRNVL 400 8******************************.************986 PP | |||||||
4 | Myb_DNA-binding | 33.9 | 7.1e-11 | 407 | 450 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g W +eEd +l+ v++ G+ W++Ia m +Rt+++c rw Traes_5AL_78AD0AF8E.1 407 GEWRPEEDSKLLASVHEVGPC-WSKIAGAMIPHRTDNMCLRRWKR 450 79*****************88.*****99999***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.075 | 147 | 243 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.049 | 151 | 245 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-7 | 152 | 184 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-7 | 218 | 263 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.1E-15 | 224 | 292 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.478 | 244 | 296 | IPR017877 | Myb-like domain |
SMART | SM00717 | 6.0E-4 | 248 | 298 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-6 | 250 | 294 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-13 | 264 | 303 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.87E-19 | 282 | 347 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.893 | 297 | 351 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-12 | 301 | 349 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-12 | 302 | 346 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.70E-9 | 304 | 347 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-16 | 304 | 347 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 10.499 | 349 | 400 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-18 | 350 | 402 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.77E-25 | 351 | 448 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-12 | 353 | 402 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-10 | 356 | 400 | No hit | No description |
Pfam | PF13921 | 2.1E-13 | 357 | 417 | No hit | No description |
PROSITE profile | PS51294 | 17.351 | 401 | 456 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-15 | 403 | 455 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-10 | 405 | 454 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.33E-8 | 408 | 451 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 822 aa Download sequence Send to blast |
MKNEASKGGD DEFIAHRPGE EDVQKKDTNA NTQTGFPKAA LLLVDALKKN RACQKFIRRK 60 MINIEAKIEV NKDLRDRVKC LMDYQLSCRR SFGKVLCQKV DPRVRLISSQ KQSAQSAKNK 120 YKISALLLGP AENPHVEKYK AVLKQFPVSL QKHPWSDVEK DRLAKGIKQQ YQETLIKDSL 180 KNGSGDFSAV DMAYALTNTV GNFEATPEIL RSVLPLVNWD YIAAMYLPGR SGAECESRWL 240 NHDDPRINHN AWTACEEKRL ILTVQEKGMH NWINIAVALG TQRTPFQCLA RYQRSLNPHI 300 LKRAWTKEED LQLVAAVQTF GCNWQLVSAS LVGRIGNQCS NRWRKTLIPE RKRVGRWSED 360 EDKRLLVSVK FFRSGSWNKI AQFVPGRTQS QCSERWRNVL DPDIDHGEWR PEEDSKLLAS 420 VHEVGPCWSK IAGAMIPHRT DNMCLRRWKR LCQDELPLIV AANQVKKSIF QNNFVDRETE 480 RPAICPSDFP SLVYSKVDRG DESTVSDQVK KPQKRSRKSR VDNVPPNDPS KSSAAAAAVN 540 ITKRKSRKKL SGSGAENQTG EDVTVSDGVN NSSRGHSKAR KRKVTTDGDV VVQKRMRGSI 600 SVDNELTLDM FGGPISFNNE ALTNQKRDPT SVGKEGTAKK RTRGTVSVGN EGAVKKKMRG 660 SISVGEGRAV KNRMRGSVSI DNQGNTTKRK RVSRKSAKGN STTDGGVNAC ELDLPSMPSE 720 TSAERHIDTG NTNKMNRKST PRPKQINMAE GTVDEYSRLA DCISFARGNG ASKNNSAMPL 780 NNAIQSDGPS GENLQVAISA RLDPTSVEQL TEDSSCQLDD NH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-23 | 222 | 471 | 3 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-23 | 222 | 471 | 3 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 508 | 514 | VKKPQKR |
2 | 637 | 643 | AKKRTRG |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368554 | 0.0 | AK368554.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075O14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150877.1 | 0.0 | uncharacterized protein LOC109736068 | ||||
TrEMBL | A0A446T8A5 | 0.0 | A0A446T8A5_TRITD; Uncharacterized protein | ||||
STRING | Traes_5AL_78AD0AF8E.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6594 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 1e-142 | myb domain protein 4r1 |
Publications ? help Back to Top | |||
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