PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_6F7D1D441.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 124aa MW: 13838.6 Da PI: 9.8007 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.6 | 1.1e-27 | 52 | 110 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D y+WrKYGqK++kgs++pr+YYrC+s + p++k+ver++ d ++++tYe++Hnh Traes_5AL_6F7D1D441.1 52 SDSYSWRKYGQKPIKGSPHPRGYYRCSSIkDYPARKHVERCRGDAGMLNVTYENDHNHA 110 69************************99879***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.4E-14 | 7 | 49 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 9.6E-31 | 40 | 112 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.783 | 46 | 112 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-24 | 49 | 112 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-30 | 51 | 111 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.0E-23 | 53 | 109 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MSETSACAPA SRKAAHKADD DGKCHCPKKK KPREKRVVRM PAVSDKVADI PSDSYSWRKY 60 GQKPIKGSPH PRGYYRCSSI KDYPARKHVE RCRGDAGMLN VTYENDHNHA QPLDLATLTA 120 NSEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-19 | 39 | 112 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU665437 | 0.0 | EU665437.1 Triticum aestivum WRKY8 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156284.1 | 1e-83 | probable WRKY transcription factor 15 | ||||
Swissprot | Q9STX0 | 4e-45 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A3B6KPH1 | 4e-85 | A0A3B6KPH1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5AL_6F7D1D441.1 | 3e-87 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12705 | 30 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24240.1 | 4e-40 | WRKY DNA-binding protein 7 |
Publications ? help Back to Top | |||
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