PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_63F3CF30A.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 70aa MW: 7820.83 Da PI: 4.3685 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24.8 | 5.4e-08 | 18 | 46 | 28 | 55 |
AP2 28 r.krfslgkfgtaeeAakaaiaarkkleg 55 + +++lg ++ +e+Aa+a++ a++k++g Traes_5AL_63F3CF30A.2 18 StSSVYLGGYDMEEKAARAYDLAALKYWG 46 4489***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 10.731 | 1 | 54 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-5 | 13 | 60 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-6 | 14 | 46 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-11 | 15 | 55 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-11 | 19 | 55 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.18E-12 | 22 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
TALCMSFAGP FAWGSIVSTS SVYLGGYDME EKAARAYDLA ALKYWGASTH INFPVEDYQE 60 ELEVMKNMTR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375318 | 1e-69 | AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156625.1 | 3e-27 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q84Z02 | 5e-24 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A453LVR0 | 9e-30 | A0A453LVR0_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453LWN4 | 2e-28 | A0A453LWN4_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453LWU8 | 2e-28 | A0A453LWU8_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5AL_63F3CF30A.2 | 3e-46 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 6e-25 | AP2 family protein |
Publications ? help Back to Top | |||
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