PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_4F083B77E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 757aa    MW: 82298.9 Da    PI: 6.7382
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_4F083B77E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.65.8e-2076130256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              R+++t eq+++Le++F++ ++p++++r eL++++gL+ +qV++WFqNrR   k
  Traes_5AL_4F083B77E.1  76 HFRRRHTVEQIQILEAAFKEGHHPDEKRRLELSRRTGLSPAQVQIWFQNRRNSGK 130
                            5699***********************************************7655 PP
2START100.43.2e-322524745205
                            HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
                  START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                            +a++el  ++++++p+W++      e  n++e+l+   +++     +  +  r +g+  +++++lv +l++    W++t++    +a+
  Traes_5AL_4F083B77E.1 252 CAMEELKVLVGLGAPVWSLAEggevEVINYKEYLKMMFPNEHhemeFGADGTRKTGIISCTATDLVGILMNAD-WWSQTFPgivaSAT 338
                            78888999999**********888877788888888777666799999999**********************.************** PP

                            EEEEECTT....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.......-TTSEE-EESSEEEEEEEE CS
                  START  81 tlevissg....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe......sssvvRaellpSgiliepk 157
                            t +vi++g    g +qlm+ael +lsp vp R+  f+R++++  +  w++vdvSvd  +++         s +  ++l pSg+ i+++
  Traes_5AL_4F083B77E.1 339 TSKVITPGdsgdGMVQLMNAELRVLSPRVPvRKINFIRHCQKIAENIWAVVDVSVDGIRDQAAglndgaPSTYTACKLQPSGCHIQEL 426
                            *******************************************************988887666666767899*************** PP

                            CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                  START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                            sngh++vtw+ ++  ++++++ l ++l +sg a ga +w a lqr ce
  Traes_5AL_4F083B77E.1 427 SNGHCQVTWIVNMVHDEATVPPLHHPLFRSGWALGACRWIASLQRRCE 474
                            *********************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-1962126IPR009057Homeodomain-like
SuperFamilySSF466893.93E-1967130IPR009057Homeodomain-like
PROSITE profilePS5007117.32972132IPR001356Homeobox domain
SMARTSM003892.5E-1974136IPR001356Homeobox domain
CDDcd000868.58E-1975126No hitNo description
PfamPF000461.9E-1776130IPR001356Homeobox domain
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PROSITE profilePS5084827.691239478IPR002913START domain
SMARTSM002347.4E-11247475IPR002913START domain
CDDcd088752.42E-71251474No hitNo description
PfamPF018527.4E-26252474IPR002913START domain
SuperFamilySSF559617.07E-19253475No hitNo description
SuperFamilySSF559614.58E-8549731No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MDGEWPEQYN DLYNWLGLGY PGGDNQVIQH NLGAEVNGLP GAAANMGNNT NAAAADQGNG  60
GGQANGDQTA GTRERHFRRR HTVEQIQILE AAFKEGHHPD EKRRLELSRR TGLSPAQVQI  120
WFQNRRNSGK SKAQKKETEE FQQENDRLQA EKQALMSAMQ NKICIICRGE DTPERQRLYA  180
ENMMLKDAHM RIADFLKNVS GGRLQVINHT VVDTHAPLTL TGPNPVTIPD HGIARDNPEA  240
DGNALAIQHV ACAMEELKVL VGLGAPVWSL AEGGEVEVIN YKEYLKMMFP NEHHEMEFGA  300
DGTRKTGIIS CTATDLVGIL MNADWWSQTF PGIVASATTS KVITPGDSGD GMVQLMNAEL  360
RVLSPRVPVR KINFIRHCQK IAENIWAVVD VSVDGIRDQA AGLNDGAPST YTACKLQPSG  420
CHIQELSNGH CQVTWIVNMV HDEATVPPLH HPLFRSGWAL GACRWIASLQ RRCEYIASLH  480
TNPVHTLNNR SGGAAAITAE GRKNVLEVAH RMTLKFYEAI CGPGSQPGRS VDERRGSCGV  540
GTERYEVAVR VVTFPVGRGV AVLRATTTVW LPRTPAQRVF NYLCDADRRT EWDISAKRTS  600
TIRQEGCFST GEVHGNSVSL LRTIASNGAY GKLILQESSI DASCMVLAYA PIDDQSVEEV  660
MNGTNISFSL LPSGVVVLPD GNAEPGAPPT SAMCSSSSSS SHKSNSGSLV STMYQTLLSG  720
QPPEHLFKAV AENVGNLLCQ AIDKIKSGVH ANVVLSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194819.10.0homeobox-leucine zipper protein ROC6-like
TrEMBLA0A446TAV60.0A0A446TAV6_TRITD; Uncharacterized protein
STRINGTraes_5AL_4F083B77E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83241742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.11e-114homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]