PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_4E653044F.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LSD | ||||||||
Protein Properties | Length: 172aa MW: 18711.5 Da PI: 8.3421 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.8 | 7.4e-13 | 40 | 64 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C tV Traes_5AL_4E653044F.1 40 CGGCRTLLMYTRNADTVRCSCCSTV 64 ***********************99 PP | |||||||
2 | zf-LSD1 | 44.9 | 1.8e-14 | 78 | 101 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg Crt+L+YP GApsV+Ca+Cd Traes_5AL_4E653044F.1 78 CGRCRTTLMYPHGAPSVKCAICDY 101 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.5E-14 | 37 | 67 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.5E-10 | 40 | 64 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.4E-12 | 75 | 103 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.9E-14 | 78 | 102 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MDYTLFKQYE HTYRSLICNK NAYTSYVFSI AAVEMAQLIC GGCRTLLMYT RNADTVRCSC 60 CSTVNLVRPV NNIAHVNCGR CRTTLMYPHG APSVKCAICD YITNITNTGI NTMSPAPCPR 120 PTSNESAYNA SSASVPTPQP QNVTVVVENP MTVDEKGKLV SNVVVGITPG KN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009620 | 0.0 | BT009620.1 Triticum aestivum clone wre1n.pk0126.e11:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196161.1 | 3e-93 | protein LOL3-like isoform X1 | ||||
Swissprot | Q6ASS2 | 1e-71 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A446TDS0 | 1e-122 | A0A446TDS0_TRITD; Uncharacterized protein | ||||
STRING | Traes_5AL_4E653044F.1 | 1e-123 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 5e-33 | LSD family protein |
Publications ? help Back to Top | |||
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