PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_4C72C5BCB.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 426aa    MW: 47816.7 Da    PI: 6.7826
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_4C72C5BCB.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4002.4e-122584252373
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            ++++++c +a +++d   ++ l+++l++l+s +gdpmqRl ay++e+L arl+ s+s+lyk+l+++e +   sse ++ ++ + e++P
  Traes_5AL_4C72C5BCB.1  58 KQVIIACGKAAAENDI-HTEVLISELRQLVSISGDPMQRLGAYMLEGLVARLSFSGSKLYKSLKCKEPT---SSELISHMHHLCEICP 141
                            7889999999888776.689************************************************9...999999999******* PP

                   GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp 175
                            +++fs++ aN aI ea+++e+ vHiiDf i qG QW+++++aLa+R++gpp lRiTg+++++s   +   l  +g rL+++ +++g+p
  Traes_5AL_4C72C5BCB.1 142 FYRFSYMSANGAIAEAIKSENFVHIIDFHIAQGSQWITIIEALAARSGGPPCLRITGIDDSNSAyaRGGGLDMVGTRLHSVSASCGMP 229
                            ************************************************************988899999******************* PP

                   GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                            fefn+ v+ + +++ le+L+++pgE+++Vn++++lh+++desvs+e++r+++++++kslsP+vv++veqe+++n+++F+ r le++ey
  Traes_5AL_4C72C5BCB.1 230 FEFNA-VHAASHEVYLEHLDIRPGEVIVVNFAYELHHTPDESVSTENHRNRIIRMIKSLSPRVVTLVEQESNTNTAPFFSRYLETFEY 316
                            *****.688999999************************************************************************* PP

                   GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                            y+a+f+s+++  pr+++ ri+ E+++l+r++ n++acegaer+er e ++kW++r+ +aGF+p+pls+ +++++k+ll +++s  yr+
  Traes_5AL_4C72C5BCB.1 317 YTAMFESIDVARPRDDKRRISTEQHCLARDVINLIACEGAERVERLEAFGKWKARFAMAGFRPYPLSSLVNNTIKTLLDNYHSC-YRL 403
                            **********************************************************************************55.*** PP

                   GRAS 352 eeesgslvlgWkdrpLvsvSaW 373
                            ee++g l+lgWk+r Lv+ SaW
  Traes_5AL_4C72C5BCB.1 404 EERDGVLYLGWKSRVLVVSSAW 425
                            ********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.78731407IPR005202Transcription factor GRAS
PfamPF035148.2E-12058425IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MRPLDLNIIW FNSTLENAIL GPELDISCDS PKSLLQAKNL LKQGNWRQVL GINTGDLKQV  60
IIACGKAAAE NDIHTEVLIS ELRQLVSISG DPMQRLGAYM LEGLVARLSF SGSKLYKSLK  120
CKEPTSSELI SHMHHLCEIC PFYRFSYMSA NGAIAEAIKS ENFVHIIDFH IAQGSQWITI  180
IEALAARSGG PPCLRITGID DSNSAYARGG GLDMVGTRLH SVSASCGMPF EFNAVHAASH  240
EVYLEHLDIR PGEVIVVNFA YELHHTPDES VSTENHRNRI IRMIKSLSPR VVTLVEQESN  300
TNTAPFFSRY LETFEYYTAM FESIDVARPR DDKRRISTEQ HCLARDVINL IACEGAERVE  360
RLEAFGKWKA RFAMAGFRPY PLSSLVNNTI KTLLDNYHSC YRLEERDGVL YLGWKSRVLV  420
VSSAWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-61594256374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2525670.0AK252567.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156f06, mRNA sequence.
GenBankAK3609130.0AK360913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128D13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180371.10.0scarecrow-like protein 21
RefseqXP_020180372.10.0scarecrow-like protein 21
RefseqXP_020180373.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A3B6KNK00.0A0A3B6KNK0_WHEAT; Uncharacterized protein
STRINGTraes_5AL_4C72C5BCB.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]