PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_41B98AAEF.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 204aa MW: 23194.4 Da PI: 7.4995 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 147.4 | 7.6e-46 | 6 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtd e v++yLk+k+ gkkl + e+i+ev++yk+ PwdL + ++++++ ew+fF+++dkk+++g+ +nr+t +gyWk Traes_5AL_41B98AAEF.1 6 LPPGFRFHPTDVEFVSYYLKRKIMGKKLFV-EAISEVELYKFAPWDLLiNhksCLQSKDLEWFFFCPHDKKNPKGSWTNRTTPNGYWK 92 79*************************999.89**************6324556777888**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++gkd ++ +++ vglkktL+f++g+apkg++tdWvm ey++ Traes_5AL_41B98AAEF.1 93 TSGKDGTIDL-NSRIVGLKKTLIFHEGKAPKGNRTDWVMYEYKM 135 *********9.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-49 | 3 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.927 | 6 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-24 | 7 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MSQTCLPPGF RFHPTDVEFV SYYLKRKIMG KKLFVEAISE VELYKFAPWD LLINHKSCLQ 60 SKDLEWFFFC PHDKKNPKGS WTNRTTPNGY WKTSGKDGTI DLNSRIVGLK KTLIFHEGKA 120 PKGNRTDWVM YEYKMEDETL VSTGFSKDAY VLSGLGPRIG VEDSQVESSA WVTAIVIREP 180 SAPQQSVQFS EHVNICSDEV AGLT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-43 | 2 | 135 | 11 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB362161 | 1e-179 | AB362161.1 Hordeum vulgare subsp. vulgare mRNA for transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200154.1 | 1e-121 | NAC domain-containing protein 13-like | ||||
Swissprot | Q9FY82 | 3e-54 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A3B6KGB6 | 1e-151 | A0A3B6KGB6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5AL_41B98AAEF.1 | 1e-152 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4731 | 36 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 6e-63 | NAC domain containing protein 103 |
Publications ? help Back to Top | |||
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