PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_373E730BB.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 312aa    MW: 35007.4 Da    PI: 9.1732
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_373E730BB.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.4e-52171441129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lp GfrFhPtdee+++ yL +kv + ++++  +i+evd++k +P +Lpkk+k +ekewyf++++d+ky+tg ++nratk+gyWkatgk
  Traes_5AL_373E730BB.1  17 LPSGFRFHPTDEEIITSYLVPKVLNPTFTA-IAIAEVDLNKNDPYELPKKAKMGEKEWYFYCQKDRKYPTGIQTNRATKAGYWKATGK 103
                            699************************999.88***************99999*********************************** PP

                    NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                            dke+++   +l+g+kktLvfykgrap+gekt+Wvmheyrle
  Traes_5AL_373E730BB.1 104 DKEIFHPLPTLIGMKKTLVFYKGRAPRGEKTNWVMHEYRLE 144
                            *******999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-5610180IPR003441NAC domain
PROSITE profilePS5100553.85917179IPR003441NAC domain
PfamPF023653.8E-2718143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MADHLQVQQQ HQHQLELPSG FRFHPTDEEI ITSYLVPKVL NPTFTAIAIA EVDLNKNDPY  60
ELPKKAKMGE KEWYFYCQKD RKYPTGIQTN RATKAGYWKA TGKDKEIFHP LPTLIGMKKT  120
LVFYKGRAPR GEKTNWVMHE YRLEISKQPA YGPSTAIAKA AAINASSKKE RVVCKIFHKN  180
IGVKKVVTPS YAMHMPMFIG GEQQQGSLNS CTFPPPMDYG ASLSLAPPLF LSEDSSYQLH  240
AARVGLAMTG SLVLPMVNNP HHEMMGGNPM VSYQQQQMMQ MQMQMGADQC FMVGVEPGSE  300
SSSMVSREGV DR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-4821851171NO APICAL MERISTEM PROTEIN
1ut4_B5e-4821851171NO APICAL MERISTEM PROTEIN
1ut7_A5e-4821851171NO APICAL MERISTEM PROTEIN
1ut7_B5e-4821851171NO APICAL MERISTEM PROTEIN
4dul_A5e-4821851171NAC domain-containing protein 19
4dul_B5e-4821851171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179085.10.0NAC domain-containing protein 92-like
SwissprotQ9FK448e-74NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A3B6KH570.0A0A3B6KH57_WHEAT; Uncharacterized protein
STRINGTraes_5AL_373E730BB.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.19e-72Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]