PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_23D7DADBE.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 542aa    MW: 59873.6 Da    PI: 6.8193
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_23D7DADBE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.4e-06285305626
                            -SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                            C +f+  G C +G+ C+FaH+
  Traes_5AL_23D7DADBE.1 285 CFDFLNKGKCERGPECRFAHS 305
                            6678888*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073802.42E-2495173No hitNo description
SMARTSM003560.0012247274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.817247275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-5251276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-6252275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-5280308IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-4281306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77284307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5284308IPR000571Zinc finger, CCCH-type
PfamPF046771.8E-34318435IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541974.91E-8326416IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.107.1E-5327416IPR011146HIT-like domain
PfamPF046767.0E-17462539IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
LEGRAAVPIP TYFTGDYGPT APRLLSKAAA DARGFNPGGI EICPNLFWLK GSALFNLHGL  60
SVAYLSGRKG LGGPGCYSQD DVDALRALAE EPGIVDLFLT NEWPAGVVDG ADTSKVPPQV  120
LDPQGYDPVV AELVAEIKPR YHIAGTKGVF YAREPYVNDS SPHVTRFIGL ANVGNKEKQK  180
FIHAISPTPA STMSSADIHA RPPNATLSPY AAPAKSVHAE DTPKRPAEST DLQYWRYDVK  240
RQRQGQTDGS LLCFKYTSSG SCPRGSKCNF RHDEEAREHC QRNVCFDFLN KGKCERGPEC  300
RFAHSLTEEA AARDAKPRSE RRRVESSCWF CLSSPDVESH LVISIGDGYY CALAKGPLVP  360
DHVLVIPVEH FPTTIAMPVE PEAELRRYKD SLGKYFEKRG RAAVYFEWVS QQSRHANLQA  420
VPVPLSKAAN VKKIFHLAAQ RLGFEFSVVN PDGDANQGRE LLRSQYDGKS GLFYVELPDG  480
TLLLHIIDSG EKFPAQFGRE VLAGLLSMAD RADWRNCKLS KEEEVKMVDD FKQGFHEFDP  540
AE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U3e-11328539675887CWF19-like protein 2
6id1_U3e-11328539675887CWF19-like protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3701430.0AK370143.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2105K14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156088.10.0zinc finger CCCH domain-containing protein 59
SwissprotQ69NK80.0C3H59_ORYSJ; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A3B6KHV80.0A0A3B6KHV8_WHEAT; Uncharacterized protein
STRINGTraes_5AL_23D7DADBE.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10173912
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]