PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_1A7387EDC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 66aa    MW: 7733.01 Da    PI: 5.035
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_1A7387EDC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS406e-13166175239
                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvv 239
                            pf+f++ +a++led++ e+L+++p+E+l+V++ ++  +l+des++ +   +rd vLk++++++P v+
  Traes_5AL_1A7387EDC.1   1 PFKFRA-IASKLEDVRAEDLHIDPDEVLVVSSLYEFRTLMDESLTFDMvsPRDMVLKTIRKMRPSVF 66 
                            7*****.7**********************************98765555**************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.648166IPR005202Transcription factor GRAS
PfamPF035142.1E-10166IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
PFKFRAIASK LEDVRAEDLH IDPDEVLVVS SLYEFRTLMD ESLTFDMVSP RDMVLKTIRK  60
MRPSVF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3750625e-66AK375062.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3084L15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162691.11e-34scarecrow-like protein 33
SwissprotQ9XE584e-14SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A453J3X21e-35A0A453J3X2_AEGTS; Uncharacterized protein
TrEMBLT1LM952e-34T1LM95_TRIUA; Uncharacterized protein
STRINGTraes_5AL_1A7387EDC.12e-39(Triticum aestivum)
STRINGTRIUR3_05951-P14e-35(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.12e-16SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]