PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_0DF34352F.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 840aa MW: 95699.8 Da PI: 6.9481 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 80.9 | 2.2e-25 | 88 | 176 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +YA +vGFsvr+++s+ksk +++i++ +fvCskeg+++e++ +k+r++ a+ r gC+a+l+v ++ d+kw+ tkl++eHnHe Traes_5AL_0DF34352F.2 88 FYIAYAGRVGFSVRIARSRKSKCSESIIMLRFVCSKEGFSKEKRVVeGKKTRKRLASIREGCNAMLEVLRRGDNKWVATKLVKEHNHE 175 9**************************************999876635677778899******************************9 PP FAR1 89 l 89 + Traes_5AL_0DF34352F.2 176 V 176 6 PP | |||||||
2 | FAR1 | 63.7 | 5.2e-20 | 210 | 296 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA ++GF+vr+++s+ks ++++ ++ ++vCs++ +++ ++++ ++r +r gC+a +++ ++++g+w+v+kl leH+Hel Traes_5AL_0DF34352F.2 210 FYYSYAIRAGFEVRVRQSRKS-QDESLKMLKLVCSRHRYHSGRENN--GDDTKRDPSRDGCNALFEIIRKDKGVWRVSKLILEHSHEL 294 9*******************9.6777***************99988..88899999*******************************9 PP FAR1 90 ap 91 +p Traes_5AL_0DF34352F.2 295 NP 296 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.2E-23 | 88 | 176 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 2.0E-17 | 210 | 296 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.7E-19 | 397 | 487 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.569 | 664 | 712 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.0E-5 | 672 | 709 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.3E-5 | 687 | 714 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 840 aa Download sequence Send to blast |
MMEPQGVELE DDSIDFWASL GVSTHVHGVD QMALHSVHIL DHQGQSLPPA VVSHPESVCK 60 ELFPVEADPC LEPRVGMEFE SGEAAKTFYI AYAGRVGFSV RIARSRKSKC SESIIMLRFV 120 CSKEGFSKEK RVVEGKKTRK RLASIREGCN AMLEVLRRGD NKWVATKLVK EHNHEVGMPS 180 TVHYIATESD TMVDPYIDME FESLESAKTF YYSYAIRAGF EVRVRQSRKS QDESLKMLKL 240 VCSRHRYHSG RENNGDDTKR DPSRDGCNAL FEIIRKDKGV WRVSKLILEH SHELNPAPAS 300 SVCCVRSQGE VLVIAKNFAD TRNLLLNGQD SQPHREIRYN DLGPEDAQSL LEYLKKVQAE 360 DPAFFYAVQL DKHEDTVNIF WADASARMAY YHFGDAVRFE TAYRSNKEHI PIVIFSGVNH 420 HVQPVIFGCA LLVDESEESF VWLFEKWLEA MHVRPPVSFV TELNQEMAAA AAKVLPDTCH 480 IFCEKHILGT VKEELHSIYP GLDHFITDLR KCIDGCRIEE SFESCWESVL IKHGFRNNEH 540 LQSLYDIRER WAPAYTKQSF HARNLLAQSC QNLEKIIDTY FSSKTQLVVA VQQLEQAICN 600 FHAKEAQVDY LTMFQPPALR TASPVEKQAG LVFSRKVFDI FQEQFAESFG YHAERLEDRM 660 LHKYRLTVDD GDEEAHIVSF SPDQSTVCCS CCLFESCGIL CRHALRVFII EGVRFLPKAY 720 VLKRWTKHAK STVTLDNYIE LRGYCEDPST SRYNDLCYDA NKCAKEGSTS TERYKIAKEA 780 LCKALDEIMP TRNIREQNSQ NCTTSLRSPV KKLGTSKGTS GKSIKRPAFK NSLVESNGSR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252774 | 0.0 | AK252774.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf172k23, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169948.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020169949.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453KQK0 | 0.0 | A0A453KQK0_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5AL_0DF34352F.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-120 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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