PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_0D4BDDDCD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 407aa    MW: 44991.5 Da    PI: 7.9044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_0D4BDDDCD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.52.1e-17122171255
                            HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            + +h++ E+rRR++iN++f+ Lr+llP+     ++K +Ka+ L +++eYI+ Lq
  Traes_5AL_0D4BDDDCD.1 122 KSKHSATEQRRRSKINDRFQILRDLLPHT----DQKRDKATFLLEVIEYIRFLQ 171
                            578*************************8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.6E-24119192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.482120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-18120195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.14E-16122175No hitNo description
PfamPF000101.0E-14122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-13126176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MERCTTSMPG ITRIQGPPRF SPYSAFFLKV QLAMKWGMPA VEFLFVVRKT PSYPVILSHS  60
ILAASINFVM HIVSIQCNYD TIRSEHCDHQ NKQNIPELAV RVDAKGGSCS GSGTDQLPNT  120
PKSKHSATEQ RRRSKINDRF QILRDLLPHT DQKRDKATFL LEVIEYIRFL QEKAQKYEAS  180
FPEWNQENAK LLPWSNMYFR SSWKNAQSKG QIAEDASPDP SQFIRNGASP GFNITGKLDD  240
NHTAVASAAI SGAPDQAETE HMASVSCRSA DTPTNIMNNV SPQSQPQWAD PSGVDDCAVN  300
SGVLNNQQLM IDEGTISVSS QYSQELLNTL THALQSSGID LSQANISVQI NLGKRAVKRP  360
TAGQSSSFKE HTDLGPTNNM MGHQQAMLGN ATEELPHATK RYKPGNT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3537240.0AK353724.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1002F06.
GenBankAK3759500.0AK375950.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3110M08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150023.10.0transcription factor BIM1-like isoform X2
TrEMBLA0A446T5J90.0A0A446T5J9_TRITD; Uncharacterized protein
STRINGTraes_5AL_0D4BDDDCD.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-60BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]