PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5AL_0CAD19709.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 872aa MW: 100089 Da PI: 7.0031

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5AL_0CAD19709.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.7	1.9e-23	120	206	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY +YA ++GF+vrk s+k+ n+ + +r +vCskeg++ ++ ++ + +++rae rtgC+a+++v+ +++gk++vt+ + +HnH+ Traes_5AL_0CAD19709.1 120 EFYVSYAGTAGFNVRKGCSEKT-ANNVTRSRSYVCSKEGFHPKSVTA--EPKKQRAEIRTGCEAHMTVRITTSGKYVVTEYVADHNHD 204 6***************9999.66669**********99988..9999********************************9 PP FAR1 89 la 90 l Traes_5AL_0CAD19709.1 205 LE 206 95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-21	120	206	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.3E-24	306	400	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.287	574	621	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.9E-6	574	618	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.1E-6	596	623	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 872 aa Download sequence Send to blast
ICNTVLCGLW TVEYDVSRPH CYNEAHILAH FRKKIVSCQA LAERRKRGDG GRFLSSDGPL 60 PSERRSKRLE KQNLKNEKKP ESKEDEIVEA EQDPETEVVA GPGGEPKVGM VFLNEDKAYE 120 FYVSYAGTAG FNVRKGCSEK TANNVTRSRS YVCSKEGFHP KSVTAEPKKQ RAEIRTGCEA 180 HMTVRITTSG KYVVTEYVAD HNHDLEAPLV DIQILRSQKL LAKLQQPPDP PKVVLIPNDY 240 KNYVRTRHTK DMQSGDAQAI SEYLQRMKGK NPSFFCSIQV DEDDQFRNVF WADVKSVMDF 300 NYFGDVVCVD TRYSTSDYCR PLLLFIGVNH HKEPTIFGTA FIYDESVESF KWLFETFKSA 360 MSGKQPRTVL TDRSTAISDA VASAWPGTAH RFSLLHLYQN ATKVLSDTFQ GSETFAHDFS 420 RSLYDYEEEG DFLSSWEILL AKYNLKDNEW LSKLYEDRER WALPYGRDIF CADIAATLRS 480 DNMDAILTGV LKTEIDLPYF FNRYDKFLEE KRLAEQQADY LGVQMTQRVP PLRLLWQAAN 540 TYTPALFEMF RLEFELVLSC MVYCCGEIGP ISEYEVTVKN RPQVHFVRFD SSEYMVVCSC 600 KKFEFVGLPC CHVLKVLEIK NIKELPPQYI LKRWRKDAQS ESPKENFGFA AVDEDPKFTV 660 SKRHNSLYRT LYKVAAKAAE NIEGQRFMES QYDQLLEQVE LLLQAKLHDK PSLSTIMRSQ 720 QPNLPQNDTS NSEPRRASSK KNKNVENRRQ QQSPLESSKK KKGRQGLVEP EEAELPLRVL 780 APTISNDIPN HMSTPTNQFL APNHIMQAPY VTQQFGLNSL QGFSGMTPFG QMQEQSPVHL 840 QQPHLQQSPF HGGPQMHQFS PWEIFMYSLR SE

Sequence ? help Back to Top

Protein Sequence Length: 872 aa Download sequence Send to blast

ICNTVLCGLW TVEYDVSRPH CYNEAHILAH FRKKIVSCQA LAERRKRGDG GRFLSSDGPL  60
PSERRSKRLE KQNLKNEKKP ESKEDEIVEA EQDPETEVVA GPGGEPKVGM VFLNEDKAYE  120
FYVSYAGTAG FNVRKGCSEK TANNVTRSRS YVCSKEGFHP KSVTAEPKKQ RAEIRTGCEA  180
HMTVRITTSG KYVVTEYVAD HNHDLEAPLV DIQILRSQKL LAKLQQPPDP PKVVLIPNDY  240
KNYVRTRHTK DMQSGDAQAI SEYLQRMKGK NPSFFCSIQV DEDDQFRNVF WADVKSVMDF  300
NYFGDVVCVD TRYSTSDYCR PLLLFIGVNH HKEPTIFGTA FIYDESVESF KWLFETFKSA  360
MSGKQPRTVL TDRSTAISDA VASAWPGTAH RFSLLHLYQN ATKVLSDTFQ GSETFAHDFS  420
RSLYDYEEEG DFLSSWEILL AKYNLKDNEW LSKLYEDRER WALPYGRDIF CADIAATLRS  480
DNMDAILTGV LKTEIDLPYF FNRYDKFLEE KRLAEQQADY LGVQMTQRVP PLRLLWQAAN  540
TYTPALFEMF RLEFELVLSC MVYCCGEIGP ISEYEVTVKN RPQVHFVRFD SSEYMVVCSC  600
KKFEFVGLPC CHVLKVLEIK NIKELPPQYI LKRWRKDAQS ESPKENFGFA AVDEDPKFTV  660
SKRHNSLYRT LYKVAAKAAE NIEGQRFMES QYDQLLEQVE LLLQAKLHDK PSLSTIMRSQ  720
QPNLPQNDTS NSEPRRASSK KNKNVENRRQ QQSPLESSKK KKGRQGLVEP EEAELPLRVL  780
APTISNDIPN HMSTPTNQFL APNHIMQAPY VTQQFGLNSL QGFSGMTPFG QMQEQSPVHL  840
QQPHLQQSPF HGGPQMHQFS PWEIFMYSLR SE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	46	RKKIVSCQALAERRKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK360042	0.0	AK360042.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1108P13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187513.1	0.0	protein FAR1-RELATED SEQUENCE 7-like isoform X1
TrEMBL	A0A446TGT6	0.0	A0A446TGT6_TRITD; Uncharacterized protein
STRING	Traes_5AL_0CAD19709.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-110	FAR1-related sequence 5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]