PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_06DC5CDA7.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 190aa MW: 20761.3 Da PI: 5.1912 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 21.5 | 5.8e-07 | 7 | 34 | 28 | 55 |
AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55 +k+++lg f+++ eAa+a+++a+ +++g Traes_5AL_06DC5CDA7.1 7 KKYIYLGLFDSEVEAARAYDRAAIRFNG 34 59*********99**********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.311 | 1 | 42 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.55E-16 | 1 | 44 | No hit | No description |
SMART | SM00380 | 1.7E-11 | 2 | 48 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-10 | 5 | 43 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-11 | 7 | 43 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MGQLLGKKYI YLGLFDSEVE AARAYDRAAI RFNGREAVTN FESSSYNGDA PPDAENEAIV 60 DADALDLDLR MSQPTAHDPK RDNIIAGLQL TFDSPESSTT MISSQPMSSS SSQWPVHQHG 120 TAVAPQQHQR LYPSACHGFY PNVQVSSSLR ERPPPPPPPP LLGARILGVV MCLLTEHLVS 180 WTDRACCVVV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB697000 | 0.0 | AB697000.1 Triticum aestivum Q mRNA for transcription factor WAP2AQ, complete cds. | |||
GenBank | AY645945 | 0.0 | AY645945.1 Triticum aestivum floral homeotic protein (Q) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154436.1 | 2e-90 | AP2-like ethylene-responsive transcription factor TOE3 isoform X2 | ||||
Swissprot | B8AMA9 | 3e-59 | AP22_ORYSI; APETALA2-like protein 2 | ||||
Swissprot | Q84TB5 | 3e-59 | AP22_ORYSJ; APETALA2-like protein 2 | ||||
TrEMBL | M8BBJ2 | 1e-101 | M8BBJ2_AEGTA; Floral homeotic protein APETALA 2 | ||||
STRING | Traes_5AL_06DC5CDA7.1 | 1e-140 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2448 | 38 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 5e-22 | related to AP2.7 |
Publications ? help Back to Top | |||
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