PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DS_F05CBDEB6.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 703aa MW: 82102.3 Da PI: 8.5549 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 80 | 4.3e-25 | 20 | 114 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 +fYn+YA e GFsvrks+ + n+ i+ r+ vCs++g+re+++ k ++++rr+r+ tr+gC+akl++++++ +g+w v+++ e Traes_4DS_F05CBDEB6.1 20 EFYNKYALEKGFSVRKSYVEWDGSNKYIILRKIVCSRQGFREDKHMKrkmEDRKRRPRSLTRVGCNAKLVITRQEeTGRWFVKDFIDE 107 6******************************************999888889999*******************99************ PP FAR1 85 HnHelap 91 H+H+lap Traes_4DS_F05CBDEB6.1 108 HSHPLAP 114 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.1E-23 | 20 | 114 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.2E-35 | 235 | 329 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.076 | 513 | 552 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MFEYLNVVSK MFDSEAEGYE FYNKYALEKG FSVRKSYVEW DGSNKYIILR KIVCSRQGFR 60 EDKHMKRKME DRKRRPRSLT RVGCNAKLVI TRQEETGRWF VKDFIDEHSH PLAPRDLSCL 120 LRSHRRISDE QKADIADMEK CGIRKYRIMD ILCFQYGGFD KVGCIKRDIY NFCHANKQET 180 ISAGDANTVI MHMMARRERD VDFFFKYLVD EHGHLKGLFW ADSQSRLDYE AFGDVIVFDS 240 TYRTNKYNLP FVPFVGLNHH RSTVIFGCGI ISHETSQAYE WMLRTFSDCM AQKHPISVIT 300 DGDLAMQRAI RVVWPDSNHR LCIWHIQQNI VRHLHDDDVK EEFRSFIYDT SSIEEHEIXW 360 IXFLQRNKVT SEESWLHQMY QMRKLWCAPY LEGRCFLGLS SNQRSESLNS VLHTHLEGKM 420 SLFEMLEHYE RCLASRRINE ALHDVEALQS VPFTEENASP LEKHAATVFT PSVFKMVLWS 480 IDAVSKCQIR EILDGSEDST YVVSKQERMD KKFGVRIEEQ GGLLHRVSCS CRKLECAGTP 540 CSHIFYILGI LKQTILPSCC VPTRWTMNAK CAYAPTRKNQ MYDYSVSLQR YRELRNCSHA 600 ASFKACHSDE DYHRLKMLLE AQHHGKQSSF EQADSKESTN AQHNSIRFGP LMPHSEKVDK 660 VLDPVHVPGR GAPKKRLQAK TKKSRSQNMC GYCKNPGHNR RKC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 75 | DRKRRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162107.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453GLU9 | 0.0 | A0A453GLU9_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DS_F05CBDEB6.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-97 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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