PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DS_E6210A614.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 322aa MW: 36039 Da PI: 7.6731 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 94.2 | 9e-30 | 80 | 183 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ltpsdv+k++rlv+pk++ae++ g + e++ l++ de g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++ Traes_4DS_E6210A614.1 80 FEKALTPSDVGKLNRLVIPKQHAERCfplgGDSGEKGLLLSFDDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLEAGDVVHFER 167 99***************************9555668889************************************************8 PP -SS..SEE..EEEEE- CS B3 85 dgr..sefelvvkvfr 98 ++ ++ +l+++ +r Traes_4DS_E6210A614.1 168 VRGlgTGDRLFIGCRR 183 8655455556666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.0E-40 | 75 | 192 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-28 | 77 | 170 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.46E-27 | 78 | 170 | No hit | No description |
SMART | SM01019 | 1.4E-21 | 80 | 184 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.888 | 80 | 184 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-27 | 80 | 184 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MTSAWFSTPH TITTASYSYS IDRPSFCQRQ QEPNTFSTQQ LARMAMNPLS QEHPNAWPWG 60 VAMYTNLHYQ QYHYEKEHLF EKALTPSDVG KLNRLVIPKQ HAERCFPLGG DSGEKGLLLS 120 FDDEAGKPWR FRYSYWTSSQ SYVLTKGWSR YVKEKHLEAG DVVHFERVRG LGTGDRLFIG 180 CRRRGDVGAS TAVAPPPAVR VVPASGQSPR EQQQHQQPWS PMCYSTSTSY PTSPATSHAY 240 RRSAEHDHSD MHHAGESQWD ADTRSCSPAS APTRQLRLFG VNLDCGPEPE AEAAPATPAM 300 YGYVHQSPYA AVSPVPSNWG SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-50 | 75 | 188 | 3 | 117 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-50 | 75 | 188 | 3 | 117 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375277 | 0.0 | AK375277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089K07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174894.1 | 0.0 | B3 domain-containing protein Os11g0156000-like | ||||
Swissprot | Q53QI0 | 1e-127 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | A0A453HNM8 | 0.0 | A0A453HNM8_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DS_E6210A614.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.2 | 1e-52 | B3 family protein |
Publications ? help Back to Top | |||
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