PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_E4442B2FF.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 246aa    MW: 25861.5 Da    PI: 7.9948
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_E4442B2FF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-1455101455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             h ++Er+RR++iN +f eL +++P +     kK++Ka+iL  Av+Y+k+ q
  Traes_4DS_E4442B2FF.1  55 DHIMAERKRREKINRRFIELSTVIPGL-----KKMDKATILSDAVKYVKEQQ 101
                            699************************.....9****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.61851100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-1255101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1755111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-1655111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-1556105No hitNo description
SMARTSM003533.6E-1557106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAQPSNEAAP SPATAPSAGA LDGPGVVEQA HVSPPSRRAS AKSAARAGHA PYAQDHIMAE  60
RKRREKINRR FIELSTVIPG LKKMDKATIL SDAVKYVKEQ QEKLKALEDR NLRSVAVESV  120
VLVKKSRTAV PQDDDVGGCC RSPSAGPGAA AGSTTTTTGS VLPEIEARIS ESNVMVRIHC  180
EDGKGVLIRL LAEVEGLHLS ITHANAVPFQ ACTVIITVMA KVDEGFSVTA EDIVGRIEAA  240
LAAPTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15964ERKRRE
26065RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3646671e-127AK364667.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175438.11e-174transcription factor NAI1-like
TrEMBLA0A3B6JCM91e-176A0A3B6JCM9_WHEAT; Uncharacterized protein
STRINGTraes_4DS_E4442B2FF.11e-178(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-40bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]