PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DS_D8AFBAC97.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NF-YB | ||||||||
Protein Properties | Length: 252aa MW: 25889 Da PI: 8.4116 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 42.7 | 1.4e-13 | 145 | 215 | 26 | 96 |
NF-YB 26 kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 + kda e + fi ++++ a+d c+ kr+tin++d++ al ++ f ++vepl++ l+++r +++ Traes_4DS_D8AFBAC97.2 145 IVNKDAMAAFAESARIFIHYLSATANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALEEFRSRNAA 215 478999999*********************************************************87665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.3E-32 | 110 | 248 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.5E-25 | 115 | 248 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.9E-8 | 146 | 190 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MAGEAKEPEA AAQGEGSKAK AKAKKPKAAA APGDEGEGAK AKKPKAAAAA ADEGEGAKAK 60 KPKAAAAAAD EGEGAKAKSK KPKAAAAAAN EGSKGKDKAA AAPVAAMTEA EVEELPKAIV 120 RRLVKDKLAR AASGGEGAEG GAEVIVNKDA MAAFAESARI FIHYLSATAN DVCKDGKRQT 180 INAEDVFKAL DEIEFPEFVE PLRTALEEFR SRNAARKPAS GKKQSEKKRK LDKEAVPEEQ 240 NGAADEANAD ED |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371068 | 0.0 | AK371068.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2124A02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188630.1 | 1e-106 | neurofilament heavy polypeptide-like isoform X1 | ||||
TrEMBL | W5ET85 | 1e-165 | W5ET85_WHEAT; Class 2 transcription repressor beta subunit | ||||
STRING | Traes_4DS_D8AFBAC97.2 | 1e-166 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10414 | 37 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 4e-31 | nuclear factor Y, subunit B11 |
Publications ? help Back to Top | |||
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