PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DS_C7C37A73D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 674aa MW: 75081.3 Da PI: 6.1436 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 341.2 | 1.8e-104 | 297 | 668 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 +lLl+cA+a+s+++ + a++lL+r++++++p+g++ qRla+yf+eAL arla+ +sely++l +++ts +++ l+a +l+ ++ Traes_4DS_C7C37A73D.1 297 HTLLLNCAQALSTDNRRTASELLKRIRQHSTPKGNAAQRLAHYFAEALDARLAGRGSELYQSLMARRTS---VADFLKANQLYMAACC 381 679**************************************************************9999...**************** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp 175 + k++++ aN++I +av g++r+Hi+D+++sqGlQWp Ll+ La+R++gpp+++iTg++ p++g + +eetg+rL++fA+ +gvp Traes_4DS_C7C37A73D.1 382 CKKVAFIFANKTICNAVVGKSRLHIVDYGLSQGLQWPGLLRMLAAREGGPPEVKITGIDLPQPGfhGAYHIEETGRRLSNFARVFGVP 469 ***************************************************************999999******************* PP GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261 f+f+ +a + e++++e+L+++++E+l+V + + l+de++ + +rd+vL+ +++++P+v+++ + +++++ Fl+rf eal Traes_4DS_C7C37A73D.1 470 FKFHG-IAAKRETVQPEDLNIDRDEVLVVISLCHFRLLMDENLGFDTpsPRDQVLNNIRKMRPDVFIHGIMNGSYGATYFLTRFREAL 556 *****.69999**********************9999999998655444*************************************** PP GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349 ysa fd l+a++pr++e r +Er ++gr++ nv+acega+r+er et+++W+ r ++aG++++pl+ +++ + ++ + + + Traes_4DS_C7C37A73D.1 557 FNYSAQFDLLDATVPRDNEGRLLLERDIFGRSALNVIACEGADRVERPETYKQWQLRNHRAGLRQLPLNPDVVRLVLDKVKDNYHKDF 644 *********************************************************************************999888* PP GRAS 350 rveeesgslvlgWkdrpLvsvSaW 373 v+e++ +l+ Wk+r L+++S W Traes_4DS_C7C37A73D.1 645 VVDEDQRWLLHRWKGRVLYALSTW 668 ************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.873 | 270 | 649 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.3E-102 | 297 | 668 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
MAATPEEFLG QQGFLARLEP PSPSLFLGLP PTPRGEEDGD SSFDDMALPY ISRLLEEDME 60 DHFFYLYPNH PALLRAQLPF AQILVDVADS ASGSTSALSP SSSTSTFDAT ASTTPSATSP 120 YDAAIQISRP PYAQVLGLAS GSPDTQSSAL LSCDEEAQNP SSDFVIGNYL LPGDQDMLNL 180 AFLKGMEEAS KFLPPNSSLP AMKVDQVVGG ALAGAGLKKK RDTLDPDMGR ASKLMMPEQE 240 EDGARELFDE MMFQEHEICM KGVQQLRIPV DSEPGKNRRK KGRPRRDSSD SEMVDLHTLL 300 LNCAQALSTD NRRTASELLK RIRQHSTPKG NAAQRLAHYF AEALDARLAG RGSELYQSLM 360 ARRTSVADFL KANQLYMAAC CCKKVAFIFA NKTICNAVVG KSRLHIVDYG LSQGLQWPGL 420 LRMLAAREGG PPEVKITGID LPQPGFHGAY HIEETGRRLS NFARVFGVPF KFHGIAAKRE 480 TVQPEDLNID RDEVLVVISL CHFRLLMDEN LGFDTPSPRD QVLNNIRKMR PDVFIHGIMN 540 GSYGATYFLT RFREALFNYS AQFDLLDATV PRDNEGRLLL ERDIFGRSAL NVIACEGADR 600 VERPETYKQW QLRNHRAGLR QLPLNPDVVR LVLDKVKDNY HKDFVVDEDQ RWLLHRWKGR 660 VLYALSTWVA DNAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-46 | 280 | 624 | 3 | 334 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366442 | 0.0 | AK366442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043B18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172169.1 | 0.0 | scarecrow-like protein 33 | ||||
Refseq | XP_020172170.1 | 0.0 | scarecrow-like protein 33 | ||||
TrEMBL | A0A3B6JIK6 | 0.0 | A0A3B6JIK6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4DS_C7C37A73D.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-135 | GRAS family protein |
Publications ? help Back to Top | |||
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