PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_AFCEDDE67.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 315aa    MW: 33601.4 Da    PI: 4.4517
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_AFCEDDE67.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.28.2e-17206242135
                   GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Traes_4DS_AFCEDDE67.2 206 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 242
                            **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.6E-86499IPR010399Tify domain
PROSITE profilePS5132014.1436499IPR010399Tify domain
PfamPF062002.2E-126798IPR010399Tify domain
PfamPF062036.9E-15133174IPR010402CCT domain
PROSITE profilePS5101713.285133175IPR010402CCT domain
SMARTSM004013.4E-9200253IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.262200250IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-11202250No hitNo description
Gene3DG3DSA:3.30.50.107.0E-14205245IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.57E-15206248No hitNo description
PROSITE patternPS003440206233IPR000679Zinc finger, GATA-type
PfamPF003202.2E-14206242IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSDPASAQGP DAEMRDAAAA AGDEDGSEDD AEEEEEEEED DEEEELPPAE EPPSPAAPEP  60
VSAFPGNPNQ LTLLFQGEVY VFESVTPDKV QAVLLLLGTG EIPPGLSAMV LPSQRENRGY  120
EDLLQRTDIP AKRVASLIRF REKRKGRNFD KQIRYAVRKE VAHRMQRRKG QFVGRANLEG  180
ESPSPGCDPA SQGSGQDFLS RESKLCQNCG TSEKMTPAMR RGPAGPRTLC NACGLMWANK  240
GTLRSCSKAK VEAPMPAIEQ CNAAVAQCQT GTDVKALPAP NNYGVAPSKG EAMDNSVTAN  300
VTAAATGGAP KAQSE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3547460.0AK354746.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1010K24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175150.10.0GATA transcription factor 18-like isoform X3
SwissprotQ10F251e-139GAT18_ORYSJ; GATA transcription factor 18
TrEMBLA0A453H2S20.0A0A453H2S2_AEGTS; Uncharacterized protein
STRINGTraes_4DS_AFCEDDE67.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-67ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]