PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DS_A0186B942.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 437aa MW: 45825.6 Da PI: 8.7425 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00024 | 193 | 215 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+dC++ F ++L+ H t H Traes_4DS_A0186B942.1 193 PCSDCDEFFVKAESLELHRATrH 215 6******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 194 | 215 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 2.21E-16 | 217 | 432 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 8.4E-14 | 222 | 433 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MDATAAGKKM SIGGEKKEQR KSGSSFWGAM ALKSRSQPAG AVESKNSRSE RKTTTTTTKR 60 SVSSIGRSMT CPGSICGTKE SAVLSRESCR NGGRNVSSSS RSLKAPDNDI LSAPVVASGA 120 VVSASSSFNS ETSVATTATT ASSSSSSSSA LSSPLSSIVA GSRSFRKLSG CYYECHSVLD 180 PRTSLVGGAG MLPCSDCDEF FVKAESLELH RATRHAVSEL GAEDTSRNVV EIIFQSSWLV 240 GKPRAAPICR IERILKVHSS GKTVERFEQY RERVKANAAS STDELARRSF PRCAADGNEI 300 LRFHCTTFTC SLGLAGATSL CGSSPQHCKL CSIIRDGFRV DGDGKIVTMA TSGRAHDKAQ 360 APLSSGGGGG GGGEKRAMLV CRVVAGRVKK LVDSSNSSEE SGCDSVSSCS DLDELCVFNP 420 MAILPCFVVM YTVATET |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250862 | 0.0 | AK250862.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100a05, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154431.1 | 0.0 | uncharacterized protein LOC109739792 | ||||
TrEMBL | A0A3B6JFR3 | 0.0 | A0A3B6JFR3_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4DS_A0186B942.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2633 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-66 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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