PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DS_9CC3EA7C9.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 778aa MW: 84289.1 Da PI: 4.3047 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.4 | 1.4e-12 | 181 | 222 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE +ll++a + +Gg+ W+ Ia+++ ++t qc +++++ Traes_4DS_9CC3EA7C9.1 181 SWTDEETLLLLEALEIFGGK-WTEIAEHVA-TKTKTQCMLHFLQ 222 7*******************.*********.**********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50934 | 12.129 | 1 | 52 | IPR007526 | SWIRM domain |
SuperFamily | SSF46689 | 1.25E-5 | 3 | 44 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.10 | 5.9E-5 | 4 | 47 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00291 | 2.1E-8 | 119 | 163 | IPR000433 | Zinc finger, ZZ-type |
PROSITE profile | PS50135 | 9.789 | 119 | 165 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57850 | 2.35E-11 | 121 | 160 | No hit | No description |
Pfam | PF00569 | 4.4E-8 | 122 | 158 | IPR000433 | Zinc finger, ZZ-type |
CDD | cd02336 | 3.79E-20 | 123 | 167 | No hit | No description |
PROSITE pattern | PS01357 | 0 | 125 | 151 | IPR000433 | Zinc finger, ZZ-type |
PROSITE profile | PS51293 | 21.06 | 177 | 228 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 4.49E-13 | 178 | 231 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-13 | 178 | 226 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-9 | 179 | 221 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.5E-12 | 181 | 223 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00271 | 199 | 223 | No hit | No description |
Pfam | PF16495 | 8.5E-21 | 665 | 743 | IPR032451 | SMARCC, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 778 aa Download sequence Send to blast |
MMKFHANPQL QLEPKDLAEL SVGEVDARQE VFDFLDHWGL INFHPFPPAG LEESKPEESQ 60 SDSRNEEKAS LIEKLFKFEP VQSYMIPLPN KGEGEIPVPL PTLLPDPVLV EDVIAAAEPS 120 VEYHCNSCSV DCSGKRYHCR TQADFDLCSN CYNEEKFDGG MSKTDFILMD STEVSGARGT 180 SWTDEETLLL LEALEIFGGK WTEIAEHVAT KTKTQCMLHF LQMQIEDRFH DGDDIHQNIH 240 ESTEQALVEK GTPEVPEKME TEEKVEGKDT KDEKPSEKTE GNHAEEKTEE GSVVENKDAK 300 NSGGADSVTT PNVDEPKPSS DTDLAKENSV NLDTSEKNAP DDAIVISGEN ASNDAIDILK 360 SAFEAVGNFP GHEGSFADAG NPVMALAAFL AGLVEDDNAT TSCRSSLKAI SEDSPALQLA 420 SRHCYILEDP PSDLKDIFVT VSNTNKDEDQ AKGEDQAKGE DMVIDSTGTE KKDINVKEEN 480 TVSVEKQNSP SISPKDHKES DTKNVSCDDE APTVEPKSNK AKETDDPIPL VDKGASNDTK 540 VPSSSTKDSV APENNANGCG LSASQEVVAG STTCATNPEL LKDKPSSEVE PDDDSPSQGK 600 IELNKTEDAV AAPTAVQEDE KTHTLGNGKL EEPNSAENVP ADGEMVSRVT AEHNDSLTTL 660 KRAAATAVSA AAAKAKLLAE QEEDQIRRLA ALVVEKLLQK TEAKMSLFAD VEHVALRTRE 720 YTEKTRKKLL MERNAIIAAR MGALPSRPNQ QGAAGNRLPP GYGAPAVRPP NAMPRPSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362898 | 0.0 | AK362898.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010P22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166067.1 | 0.0 | SWI/SNF complex subunit SWI3D isoform X1 | ||||
TrEMBL | A0A446R7W6 | 0.0 | A0A446R7W6_TRITD; Uncharacterized protein | ||||
STRING | Traes_4DS_9CC3EA7C9.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4542 | 12 | 14 |
Publications ? help Back to Top | |||
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