PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_4DS_99EC36CD4.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 341aa MW: 37907.2 Da PI: 8.4848 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.3 | 5.6e-31 | 48 | 101 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+ave+LGG++ AtPk +l+lm+v gL++ hvkSHLQ+YR+ Traes_4DS_99EC36CD4.1 48 PRLRWTPELHHCFVRAVERLGGQDCATPKLVLQLMNVRGLSIGHVKSHLQMYRS 101 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-29 | 44 | 102 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.064 | 44 | 104 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.69E-15 | 45 | 102 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.9E-23 | 47 | 103 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-9 | 49 | 100 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 341 aa Download sequence Send to blast |
MGTSSMGNDG SSAASNDDST VEEEGGQDMT RAGDSSSSVR PYVRSKNPRL RWTPELHHCF 60 VRAVERLGGQ DCATPKLVLQ LMNVRGLSIG HVKSHLQMYR SKKIDHSGQV IIGHLQQGGQ 120 VYNYAHLPFH HRVSGAGTML SRFGTRPCPP WRGSWHEPYW LHGHRLLGSK PYYSSSARAH 180 HDEAPLRARA QHVSGYNPAL IVQESCSSRN DHHAMNRYNY ERRPMQAATM VDNNDHIHGR 240 DIDLDLSLDI GGGQRLEMKS KRGCTRWGKQ AEEDDDHQVD VNEELKSTAT RLSLSLFSPS 300 PSTLDRKGSS ASDHALDLDV NVDKIGKVQY AIRASTLGLS I |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-16 | 49 | 103 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-16 | 49 | 103 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-16 | 49 | 103 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-16 | 49 | 103 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK107297 | 3e-77 | AK107297.1 Oryza sativa Japonica Group cDNA clone:002-126-C05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151276.1 | 0.0 | uncharacterized protein LOC109736464 | ||||
TrEMBL | A0A3B6JIE4 | 0.0 | A0A3B6JIE4_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4DS_99EC36CD4.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4408 | 36 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38300.1 | 2e-37 | G2-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|