PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_4DS_8B2168C85.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 325aa MW: 35907.2 Da PI: 6.4248 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.8 | 1.2e-10 | 154 | 202 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Traes_4DS_8B2168C85.2 154 NSHSLAERLRRKKISERMKLLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 202 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.19E-11 | 149 | 206 | No hit | No description |
SuperFamily | SSF47459 | 6.28E-17 | 149 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 151 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.44 | 151 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.7E-8 | 154 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-10 | 157 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 325 aa Download sequence Send to blast |
MYSGQQSDQG PAANSGKEFL EGNWGSEAMH QKMGYDSGAY GFQAYGMELE ERPGLYRSSA 60 GTFSQNIQMS DEHSGGVKKR KGTDDCIALL NPSASSKNVG DQQAEVSSQP ERNSVERDNR 120 KISPKTQSKE DSSDGDGTKE NYVHFRAKRG QATNSHSLAE RLRRKKISER MKLLQDLVPG 180 CNKITGKAVM LDEIINYVQS LQRQVEFLSM KLATVNPELG FDIEQILSKQ MMLSQDRRLG 240 FYGADPGSSA LIAHFNQGMM HPDMMCNASN PAGALHGTIH DISMMNQMPE MWETLQNIPH 300 MNFNPAVAAD SSTNNAGICP MKIEQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK360959 | 0.0 | AK360959.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129G12. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198221.1 | 0.0 | transcription factor bHLH49-like | ||||
Refseq | XP_020198222.1 | 0.0 | transcription factor bHLH49-like | ||||
Refseq | XP_020198223.1 | 0.0 | transcription factor bHLH49-like | ||||
TrEMBL | A0A453HAD0 | 0.0 | A0A453HAD0_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DS_8B2168C85.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6033 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10120.1 | 6e-56 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|