PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_808AD9543.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 266aa    MW: 29089.7 Da    PI: 10.1466
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_808AD9543.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like955.6e-30152455
                G2-like  4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                           +rWt+ LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Traes_4DS_808AD9543.2  1 MRWTTALHAHFVQAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 52
                           79*************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002493.4E-7151IPR001005SANT/Myb domain
SuperFamilySSF466894.84E-14152IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-23152IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.5E-26152IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MRWTTALHAH FVQAVQLLGG HERATPKSVL ELMNVKDLTL AHVKSHLQMY RTVKGTASDR  60
SCAAGHGQIR DMGFLRRDGE VHGFDMFSNI ISNTRRQPWA SPAEQLQPPF AQEQGGGGPP  120
LPSAYLMSIH QYLMKQNQGW RGAQQQDASL NCPGQDRGQR LHVGARHDET PRIGSSTAGF  180
ARGWSSSSSL SLSPSPSTPL QMNGRNAGSA AEQACMKQQQ APSRVPSLEM SLGRQGWQNA  240
IEQQQRQGQP SVESSASKEL TLLKCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-16154457Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16154457Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16154457Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16154457Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189915.10.0probable transcription factor RL9
TrEMBLA0A3B6JGR20.0A0A3B6JGR2_WHEAT; Uncharacterized protein
STRINGTraes_4DS_808AD9543.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.23e-31G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]