PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_7BFAC49C2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 377aa    MW: 40444.8 Da    PI: 9.5039
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_7BFAC49C2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.3e-17102149148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g+WT+eEd++l+ ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Traes_4DS_7BFAC49C2.1 102 KGAWTKEEDQRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 149
                            79******************************99************97 PP

2Myb_DNA-binding60.34e-19155199147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg++T+eEdel+++++++lG++ W++Ia +++ gRt++++k++w+++
  Traes_4DS_7BFAC49C2.1 155 RGNFTEEEDELIIKLHELLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 199
                            89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-2493152IPR009057Homeodomain-like
PROSITE profilePS5129417.08797149IPR017930Myb domain
SMARTSM007177.4E-14101151IPR001005SANT/Myb domain
SuperFamilySSF466896.83E-30101196IPR009057Homeodomain-like
PfamPF002493.8E-15102149IPR001005SANT/Myb domain
CDDcd001672.35E-11104149No hitNo description
PROSITE profilePS5129429.51150204IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-28153204IPR009057Homeodomain-like
SMARTSM007172.0E-18154202IPR001005SANT/Myb domain
PfamPF002492.5E-17155199IPR001005SANT/Myb domain
CDDcd001673.39E-14157200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGPRSAPPPS SSSSPPPRIK PTTHPRLPSL SSSLALKKLA RTHAPPTPHR SSFPSDPPTA  60
TTAYIISPLL VCGAGGSCLQ RTYVPAGGMG RSPCCEKAHT NKGAWTKEED QRLIAYIKAH  120
GEGCWRSLPK AAGLLRCGKS CRLRWINYLR PDLKRGNFTE EEDELIIKLH ELLGNKWSLI  180
AGRLPGRTDN EIKNYWNTHI KRKLLARGMD PHTHRPLNAI AGAAMPAQQL RAAHQHQYAA  240
ATPGGHHLQP QQQDPFAALS SSAEPACSHS SDDEPAGSAT PPPPSRRHLG IDLNLSISLA  300
PYQPGDDPAV KQEAATTASH NNATTSTSAA CMCLNHLGFQ GAGEGCRCGG ASSVPMQQQA  360
STQHMFRFIA PLEGGRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-311022047108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0547581e-164BT054758.1 Zea mays full-length cDNA clone ZM_BFb0028G03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173633.10.0myb-related protein 330-like
SwissprotP813952e-90MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A446R5760.0A0A446R576_TRITD; Uncharacterized protein
STRINGTraes_4DS_7BFAC49C2.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-88myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]