PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DS_7BFAC49C2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 377aa MW: 40444.8 Da PI: 9.5039 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.3e-17 | 102 | 149 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl Traes_4DS_7BFAC49C2.1 102 KGAWTKEEDQRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 149 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 60.3 | 4e-19 | 155 | 199 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++++lG++ W++Ia +++ gRt++++k++w+++ Traes_4DS_7BFAC49C2.1 155 RGNFTEEEDELIIKLHELLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 199 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-24 | 93 | 152 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.087 | 97 | 149 | IPR017930 | Myb domain |
SMART | SM00717 | 7.4E-14 | 101 | 151 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.83E-30 | 101 | 196 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-15 | 102 | 149 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.35E-11 | 104 | 149 | No hit | No description |
PROSITE profile | PS51294 | 29.51 | 150 | 204 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-28 | 153 | 204 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-18 | 154 | 202 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-17 | 155 | 199 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.39E-14 | 157 | 200 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MGPRSAPPPS SSSSPPPRIK PTTHPRLPSL SSSLALKKLA RTHAPPTPHR SSFPSDPPTA 60 TTAYIISPLL VCGAGGSCLQ RTYVPAGGMG RSPCCEKAHT NKGAWTKEED QRLIAYIKAH 120 GEGCWRSLPK AAGLLRCGKS CRLRWINYLR PDLKRGNFTE EEDELIIKLH ELLGNKWSLI 180 AGRLPGRTDN EIKNYWNTHI KRKLLARGMD PHTHRPLNAI AGAAMPAQQL RAAHQHQYAA 240 ATPGGHHLQP QQQDPFAALS SSAEPACSHS SDDEPAGSAT PPPPSRRHLG IDLNLSISLA 300 PYQPGDDPAV KQEAATTASH NNATTSTSAA CMCLNHLGFQ GAGEGCRCGG ASSVPMQQQA 360 STQHMFRFIA PLEGGRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-31 | 102 | 204 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054758 | 1e-164 | BT054758.1 Zea mays full-length cDNA clone ZM_BFb0028G03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020173633.1 | 0.0 | myb-related protein 330-like | ||||
Swissprot | P81395 | 2e-90 | MYB30_ANTMA; Myb-related protein 330 | ||||
TrEMBL | A0A446R576 | 0.0 | A0A446R576_TRITD; Uncharacterized protein | ||||
STRING | Traes_4DS_7BFAC49C2.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 3e-88 | myb domain protein 4 |
Publications ? help Back to Top | |||
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