PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DS_71AA74F78.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HB-other | ||||||||
Protein Properties | Length: 78aa MW: 8606.62 Da PI: 10.8088 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.3 | 1.1e-07 | 3 | 29 | 29 | 55 |
HHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 29 ereeLAkklgLterqVkvWFqNrRake 55 e+ LA+++gL++rq+ +WF N+R ++ Traes_4DS_71AA74F78.1 3 EKLALAESTGLDTRQINNWFINQRKRH 29 6678********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.657 | 1 | 32 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.15E-8 | 1 | 32 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-14 | 2 | 33 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.48E-10 | 2 | 39 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.6E-10 | 3 | 28 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 7 | 30 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
EPEKLALAES TGLDTRQINN WFINQRKRHW RPAPPAMGSR LQHIDAGAST SSSPAVLGME 60 GQHFTRRSGY PDGGPLRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035205 | 9e-31 | BT035205.1 Zea mays full-length cDNA clone ZM_BFb0044N12 mRNA, complete cds. | |||
GenBank | BT040622 | 9e-31 | BT040622.1 Zea mays full-length cDNA clone ZM_BFc0104L02 mRNA, complete cds. | |||
GenBank | KJ727571 | 9e-31 | KJ727571.1 Zea mays clone pUT5431 HB transcription factor (HB110) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175442.1 | 5e-50 | homeobox protein knotted-1-like 4 | ||||
Swissprot | Q75LX7 | 3e-23 | KNOS4_ORYSJ; Homeobox protein knotted-1-like 4 | ||||
TrEMBL | A0A3B6JDK2 | 2e-48 | A0A3B6JDK2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4DS_71AA74F78.1 | 2e-51 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14756 | 13 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 2e-15 | KNOTTED-like from Arabidopsis thaliana |
Publications ? help Back to Top | |||
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