PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_6A9EB40A4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 271aa    MW: 28705.6 Da    PI: 8.1379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_6A9EB40A4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.6e-1481127455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  +++++k+Lq
  Traes_4DS_6A9EB40A4.1  81 DHIMAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDTTRHVKELQ 127
                            699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.49777126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1181127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1781139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-1682142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.14E-1582131No hitNo description
SMARTSM003531.1E-1483132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
LNSARCAPRL SRNGGGTNLP VTSWNFCAAS ALPASDGTLD SGSAGPVVSE TVYGSQPTRR  60
AAARSPTGTG PVSSVPPYAQ DHIMAERKRR EKINQRFIEL STVIPGLKKM DKATILSDTT  120
RHVKELQEKI KALEAAAGRS SRSNETVVLV KKPCYAAVAD ENGSPSSASS GAPAAEKPLP  180
EIEVRFSETG IMVRILCHDV KGVVVRVLSE VEEGLHLTVT HANVMPFTAC TVIITITAKV  240
DESFIVTAED IVGRLNSVVE QHSSCTSAEG K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590ERKRRE
28691RKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659950.0AK365995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175444.11e-153transcription factor bHLH25-like
TrEMBLA0A3B6JEJ40.0A0A3B6JEJ4_WHEAT; Uncharacterized protein
STRINGTraes_4DS_6A9EB40A4.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-44bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]