PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_66942ADD7.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 321aa    MW: 35895 Da    PI: 6.0883
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_66942ADD7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.73.9e-082392722255
                            SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
               Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                             +yps+ e++ LA++++L+ +q+ +WF N+R ++
  Traes_4DS_66942ADD7.1 239 WPYPSELEKAALAESTRLDAKQINNWFINQRKRH 272
                            59*****************************885 PP
2ELK33.59.4e-12192213122
                    ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                            ELK +Ll+KYsgyL+sL+  +s
  Traes_4DS_66942ADD7.1 192 ELKSHLLNKYSGYLSSLWRDLS 213
                            9*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.6E-1956100IPR005540KNOX1
PfamPF037901.9E-205796IPR005540KNOX1
SMARTSM012565.4E-27105156IPR005541KNOX2
PfamPF037913.4E-23109155IPR005541KNOX2
SMARTSM011881.5E-6192213IPR005539ELK domain
PfamPF037895.0E-9192213IPR005539ELK domain
PROSITE profilePS512139.655192212IPR005539ELK domain
PROSITE profilePS5007112.115212275IPR001356Homeobox domain
SuperFamilySSF466891.8E-17213289IPR009057Homeodomain-like
SMARTSM003892.6E-10214279IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.0E-24217276IPR009057Homeodomain-like
CDDcd000865.36E-11221275No hitNo description
PfamPF059206.9E-15232271IPR008422Homeobox KN domain
PROSITE patternPS000270250273IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDQFPLLPSG SKANTSTPLY LTLDNTTSGA STSPVPEPAP APPEPSTHSN HDRGTDTVKA  60
KIMSHPLYPA LLTAFIECQK VGAPPEIVGR LSALAGDLHS DPGDRRQDPV PDPELDEFME  120
TYCDVLVRYK QELTRPIQEA DQFFRAMEAQ MESFTLDDDQ SYEGGGSSED EQEAGDVGGL  180
PEITSHCAED KELKSHLLNK YSGYLSSLWR DLSKKKKKGK LPRDARQKLL HWWQLHYRWP  240
YPSELEKAAL AESTRLDAKQ INNWFINQRK RHWKPTPPAM EYMSQQQHPH PYGGASSSSS  300
APFRTTDGHY FAGGSAYPRG P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5440461e-123AF544046.1 Hordeum vulgare knotted 2 (kn2) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175441.10.0homeobox protein knotted-1-like 4
SwissprotQ75LX71e-152KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLA0A453H2150.0A0A453H215_AEGTS; Uncharacterized protein
STRINGTraes_4DS_66942ADD7.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-81KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]