PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DS_581BE0CB7.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HB-other | ||||||||
Protein Properties | Length: 87aa MW: 9982.3 Da PI: 5.8279 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 33.1 | 9.3e-11 | 22 | 59 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 F+ ++yps +e+ +LA ++gLt rq+++WF N R + Traes_4DS_581BE0CB7.1 22 FNHflDPYPSDSEKLRLAVSTGLTRRQISNWFINARVR 59 5544589*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 3.5E-9 | 3 | 67 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-26 | 8 | 69 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.41E-18 | 10 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.18E-13 | 14 | 64 | No hit | No description |
Pfam | PF05920 | 3.3E-18 | 20 | 59 | IPR008422 | Homeobox KN domain |
PROSITE profile | PS50071 | 11.936 | 22 | 63 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
QVCKPLRGLP EGSVAVLRAW LFNHFLDPYP SDSEKLRLAV STGLTRRQIS NWFINARVRL 60 WKPMVEEMYA DEFSDVSSRD DDAAPSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-17 | 9 | 67 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-17 | 9 | 67 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 2e-17 | 9 | 67 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 2e-17 | 9 | 67 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 2e-17 | 9 | 67 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 2e-17 | 9 | 67 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373388 | 1e-100 | AK373388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3029F10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149612.1 | 2e-57 | BEL1-like homeodomain protein 3 | ||||
Swissprot | Q1PFD1 | 1e-35 | BLH11_ARATH; BEL1-like homeodomain protein 11 | ||||
TrEMBL | A0A453H2J9 | 2e-56 | A0A453H2J9_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DS_581BE0CB7.1 | 1e-58 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75430.1 | 4e-38 | BEL1-like homeodomain 11 |
Publications ? help Back to Top | |||
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