PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_5644BB36D.3
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 446aa    MW: 50380 Da    PI: 7.1357
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_5644BB36D.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS270.65.1e-83214334374
                   GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPi 90 
                            +L+ec  +v +g+ e++++   ++s+las  + p+qR+   ++  La+rl   v++ ++al  ps+    ++s   aa++ f ++sP+
  Traes_4DS_5644BB36D.3  21 ALYECMAHVIEGSVEKTDRSFMKISKLASVVDGPLQRMSRIIAHSLARRLICPVQGFAAALiDPSHYL--EQSCLRAARENFADISPY 106
                            799*************************************************9999887774444443..35555567788******* PP

                   GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                            l  +++t N+a+le v+ ++ v i+D++ s     QW+ +lq + sRp+gpp+lR+T+v++    ++e l +++  L k A++l++ f
  Traes_4DS_5644BB36D.3 107 LSTGFVTINRAMLEQVQDQKVVRIVDLSCSTThqWQWIKILQDFHSRPGGPPELRLTVVHE----DSEFLDNMQACLCKQAANLKLCF 190
                            ***************************98766115789***********************....9********************** PP

                   GRAS 177 efnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll...........................................des 217
                             f+  v  +le+l++++L    +++ gEa++++++lq+hrll                                           + +
  Traes_4DS_5644BB36D.3 191 YFDK-VIGKLETLDFSNLreilKINFGEAVVISCALQMHRLLavddsisrdftaqlqqmanmarlkqmacsacspastlnypqtpSPQ 277
                            ****.688999999998843335555********************************************************988667 PP

                   GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305
                             +++s   ++L +++ l+Pk++v++eq+adhn++ F +rf+++++yy+alfdsl+a   ++s +r+ vEr+llg+ei+n++ ceg +r
  Traes_4DS_5644BB36D.3 278 RQIPSLLVSFLYAIRALEPKIIVMMEQDADHNAPLFHDRFTKTVDYYAALFDSLNAV-DAASPQRARVERVLLGEEIKNILVCEGVQR 364
                            777778899*********************************************876.7899************************** PP

                   GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             erhe+l++W++ ++++    vpls +a  + k  l  ++ +  + +e+++ l+l+W   +L+s+SaWr
  Traes_4DS_5644BB36D.3 365 HERHERLSQWEMHMQRCEVDHVPLSFEAIREGKERLMSYGLKQCKSKEDKAGLLLCWGATRLYSISAWR 433
                            ****************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.5521413IPR005202Transcription factor GRAS
PfamPF035141.8E-8021433IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDRPCAHEQV TADDLTQLGP ALYECMAHVI EGSVEKTDRS FMKISKLASV VDGPLQRMSR  60
IIAHSLARRL ICPVQGFAAA LIDPSHYLEQ SCLRAARENF ADISPYLSTG FVTINRAMLE  120
QVQDQKVVRI VDLSCSTTHQ WQWIKILQDF HSRPGGPPEL RLTVVHEDSE FLDNMQACLC  180
KQAANLKLCF YFDKVIGKLE TLDFSNLREI LKINFGEAVV ISCALQMHRL LAVDDSISRD  240
FTAQLQQMAN MARLKQMACS ACSPASTLNY PQTPSPQRQI PSLLVSFLYA IRALEPKIIV  300
MMEQDADHNA PLFHDRFTKT VDYYAALFDS LNAVDAASPQ RARVERVLLG EEIKNILVCE  360
GVQRHERHER LSQWEMHMQR CEVDHVPLSF EAIREGKERL MSYGLKQCKS KEDKAGLLLC  420
WGATRLYSIS AWRPRSSNAA PNNVAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-312443624381Protein SCARECROW
5b3h_D4e-312443624381Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3759190.0AK375919.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3109N01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187419.10.0scarecrow-like protein 3
RefseqXP_020187421.10.0scarecrow-like protein 3
RefseqXP_020187422.10.0scarecrow-like protein 3
TrEMBLA0A3B6JH500.0A0A3B6JH50_WHEAT; Uncharacterized protein
TrEMBLA0A453HQM10.0A0A453HQM1_AEGTS; Uncharacterized protein
TrEMBLM8APN20.0M8APN2_AEGTA; Uncharacterized protein
STRINGEMT065260.0(Aegilops tauschii)
STRINGTraes_4DS_5644BB36D.30.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-73scarecrow-like 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]