PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DS_3C9C1DBA1.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 545aa MW: 63808.4 Da PI: 7.5406 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 62.4 | 1.3e-19 | 62 | 147 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YAk+ GF v ++++++ ++ + + t+ C+++gk++ ++k+ + +++++tr++C ak++ +++ ++k+++t++ l+HnH+ Traes_4DS_3C9C1DBA1.3 62 SFYKDYAKKEGFGVIRRTTRHG-EDSKLVYFTLACNRQGKAQYSSKN---SFKPNPSTRMQCPAKINFSRH-EEKFRITSITLDHNHP 144 5***************999998.6666999*************9999...999****************99.9**************9 PP FAR1 89 lap 91 ++p Traes_4DS_3C9C1DBA1.3 145 ISP 147 875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-17 | 62 | 147 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.1E-36 | 267 | 361 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MMEPDLIFGE VVDKNRAFED ADEDAVIFEE IRDSSDDQQV EHIMMLQPKK GMTFDSEDAA 60 VSFYKDYAKK EGFGVIRRTT RHGEDSKLVY FTLACNRQGK AQYSSKNSFK PNPSTRMQCP 120 AKINFSRHEE KFRITSITLD HNHPISPSKA RFLRCHKKLN LHAKRRLELN DQAGIRLNKK 180 IGSLVMEAGG YGNLEFGEKE CRNYLQETRR LKLGAGDAHA VYQYFLRMQS KDPDFFHLMD 240 VDKDGRLRNV FWADARSRAT YESYCDVITF DTTYLTNKYS MPFAPFVGVN HHGESVLLGC 300 GLLSNEDTGT FAWLFKSWLC CMSNKPPNVI ITDQCKAMQN AIEEVFPQAR HRWWIWHIMK 360 KIPEKLSGYD KYENIKYTLS NVVYDSLTKC DFDKAWVEMI NKYDLHENEW LAGLYDEKNR 420 WVPAYVKDTF WAGMSSTQRS ESVNAFFDGY VHARTTLKQF VEQYENALRD KVEKETKADS 480 KSFQEEIPCI THFDFEKQFQ VAYTNAKFQE FQEKLRGKIY CYPSLLNNEG PLLTFRIRED 540 RKIFF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314597.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A453HXH3 | 0.0 | A0A453HXH3_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DS_3C9C1DBA1.3 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-113 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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